Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RAB72_RS09085 Genome accession   NZ_CP132979
Coordinates   1769813..1770442 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ARS-C101     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764813..1775442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB72_RS09065 ycbZ 1765214..1766974 (-) 1761 WP_000156526.1 Lon protease family protein -
  RAB72_RS09070 matP 1767160..1767612 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RAB72_RS09075 ompA 1767688..1768728 (-) 1041 WP_000750416.1 porin OmpA -
  RAB72_RS09080 sulA 1769085..1769594 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RAB72_RS09085 sxy/tfoX 1769813..1770442 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RAB72_RS09090 yccS 1770405..1772567 (-) 2163 WP_000875023.1 YccS family putative transporter -
  RAB72_RS09095 yccF 1772577..1773023 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RAB72_RS09100 helD 1773146..1775200 (+) 2055 WP_001349949.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=797557 RAB72_RS09085 WP_000839153.1 1769813..1770442(+) (sxy/tfoX) [Escherichia coli strain ARS-C101]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=797557 RAB72_RS09085 WP_000839153.1 1769813..1770442(+) (sxy/tfoX) [Escherichia coli strain ARS-C101]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1