Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   PXX05_RS12530 Genome accession   NZ_CP119078
Coordinates   2873068..2873721 (-) Length   217 a.a.
NCBI ID   WP_275088529.1    Uniprot ID   -
Organism   Legionella cardiaca strain H63     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2868068..2878721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXX05_RS12515 (PXX05_12515) gap 2869445..2870437 (+) 993 WP_275088526.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  PXX05_RS12520 (PXX05_12520) - 2870448..2871635 (+) 1188 WP_275088527.1 phosphoglycerate kinase -
  PXX05_RS12525 (PXX05_12525) pyk 2871619..2873037 (+) 1419 WP_275088528.1 pyruvate kinase -
  PXX05_RS12530 (PXX05_12530) rocC 2873068..2873721 (-) 654 WP_275088529.1 ProQ/FinO family protein Regulator
  PXX05_RS12535 (PXX05_12535) - 2874010..2874222 (+) 213 WP_275088530.1 hypothetical protein -
  PXX05_RS12540 (PXX05_12540) dapB 2874236..2874967 (+) 732 WP_275088531.1 4-hydroxy-tetrahydrodipicolinate reductase -
  PXX05_RS12545 (PXX05_12545) - 2875012..2876820 (-) 1809 WP_275088532.1 hypothetical protein -
  PXX05_RS12550 (PXX05_12550) - 2876932..2877723 (-) 792 WP_275088533.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24185.09 Da        Isoelectric Point: 10.9682

>NTDB_id=797554 PXX05_RS12530 WP_275088529.1 2873068..2873721(-) (rocC) [Legionella cardiaca strain H63]
MRRQELHPRTAVLNKAQKNKSKKARNEALLWLAATFPQVFDNTLRIRPLKVGIMDDILAVADKALEFGISKSKLREAVVV
FTRRIDYLACLKAREMRVDLEGNPVSVVTEDEAEKAAIKIKKRVEKSARNARKLLPAKTPVTSASVKSSVSVHPSSQEAA
PYFPERAPAFSAQNPITPPQRAAVVVKHKPSRQFDPDAVARLKEKLGLSRKTQETTD

Nucleotide


Download         Length: 654 bp        

>NTDB_id=797554 PXX05_RS12530 WP_275088529.1 2873068..2873721(-) (rocC) [Legionella cardiaca strain H63]
ATGAGAAGGCAAGAACTTCATCCCCGCACGGCAGTACTAAACAAAGCCCAGAAGAACAAATCAAAAAAAGCTCGTAATGA
AGCATTATTATGGCTTGCAGCAACTTTCCCGCAAGTTTTTGATAATACTTTGCGAATTCGTCCATTAAAAGTAGGCATTA
TGGATGACATTTTAGCTGTGGCAGATAAAGCGCTTGAGTTTGGTATTTCCAAGAGTAAATTGCGTGAGGCCGTGGTCGTG
TTTACTCGACGTATTGATTACCTGGCTTGCCTTAAAGCGCGTGAAATGCGTGTCGATTTAGAGGGAAATCCTGTTAGTGT
TGTAACGGAAGATGAAGCAGAAAAAGCCGCAATAAAAATTAAAAAACGTGTTGAAAAAAGTGCCCGTAATGCTCGTAAAC
TTCTTCCTGCAAAAACTCCTGTGACCAGCGCGAGTGTCAAGTCTTCTGTATCAGTACATCCATCCTCTCAAGAAGCTGCG
CCTTATTTTCCCGAACGCGCGCCTGCTTTCAGTGCTCAAAACCCAATAACACCACCTCAACGAGCAGCAGTTGTGGTAAA
ACATAAACCTTCACGACAATTTGATCCAGATGCTGTTGCACGTTTGAAAGAAAAATTAGGACTATCGCGTAAAACGCAAG
AGACAACAGATTAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(25-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

61.207

100

0.654