Detailed information    

insolico Bioinformatically predicted

Overview

Name   lqsT   Type   Regulator
Locus tag   PXX05_RS06620 Genome accession   NZ_CP119078
Coordinates   1525089..1526345 (-) Length   418 a.a.
NCBI ID   WP_275090270.1    Uniprot ID   -
Organism   Legionella cardiaca strain H63     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520089..1531345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXX05_RS06600 (PXX05_06600) - 1520733..1522157 (+) 1425 WP_275090266.1 response regulator -
  PXX05_RS06605 (PXX05_06605) - 1522154..1523086 (-) 933 WP_275090267.1 response regulator -
  PXX05_RS06610 (PXX05_06610) - 1523242..1524243 (+) 1002 WP_275090268.1 GNAT family N-acetyltransferase -
  PXX05_RS06615 (PXX05_06615) - 1524365..1525060 (+) 696 WP_275090269.1 iron-containing redox enzyme family protein -
  PXX05_RS06620 (PXX05_06620) lqsT 1525089..1526345 (-) 1257 WP_275090270.1 sensor histidine kinase Regulator
  PXX05_RS06625 (PXX05_06625) - 1526405..1527208 (-) 804 WP_275090271.1 hypothetical protein -
  PXX05_RS06630 (PXX05_06630) - 1527333..1529600 (-) 2268 WP_275090272.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 47866.76 Da        Isoelectric Point: 8.7663

>NTDB_id=797545 PXX05_RS06620 WP_275090270.1 1525089..1526345(-) (lqsT) [Legionella cardiaca strain H63]
MRALKRTLLFIYLYLAKQTEEASHQITLFAIVMMINFPLFGVLWKFEIFQVSEEFVLRIIATALCALLATHQFWPGRILK
ILPFLWYITLLFCLPFFFTYLTLLNHGSTLWLMNCVSAIFFLLLVTSALNALILLFLGVGLAFISYFYLMGNTVVYLPGN
VSIYSLIITFAAAAIIGALFARDRELIQEGKISGMRLLAGSIAHDLRTPLASIHLQAELQEMFVEKLKNPKVRKHLKESL
HKITRGIEMSNQLISMQLNNIQRDKFDTKDFLILPIKELLERALEEYPLKKGQKELIHLNLETNFSIWIEEVAFKNLIWN
LLKNSLDFIDEIGKGEITIWLVTGEEKDDFNYLHIKDTAKGIKNPEKIFESFYSSRKGGTGVGLAYCKLLMTAAGGDIFC
KGKPNEYAHFILKFPKVD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=797545 PXX05_RS06620 WP_275090270.1 1525089..1526345(-) (lqsT) [Legionella cardiaca strain H63]
ATGAGGGCACTTAAAAGAACTCTGCTTTTTATTTATTTGTATTTAGCAAAGCAGACGGAAGAAGCAAGCCATCAAATTAC
TTTATTTGCCATCGTTATGATGATCAATTTCCCTTTATTTGGTGTACTGTGGAAATTTGAGATATTTCAAGTCAGCGAAG
AGTTTGTGCTTCGAATCATAGCAACTGCTCTTTGTGCGCTATTGGCAACACACCAATTTTGGCCTGGACGAATACTTAAA
ATATTGCCATTTCTTTGGTATATCACTTTATTATTTTGTTTGCCGTTTTTTTTCACCTACTTAACCTTGCTTAATCATGG
TTCAACTTTATGGTTAATGAATTGTGTCTCTGCCATTTTCTTTTTGCTTTTAGTAACCAGCGCTCTTAATGCTCTGATTC
TCTTATTTTTAGGAGTAGGGTTAGCGTTTATCAGTTATTTTTATTTAATGGGCAATACAGTGGTTTATCTGCCCGGAAAT
GTCTCAATTTATAGTCTGATTATTACCTTTGCTGCTGCAGCAATTATTGGTGCCTTGTTTGCACGAGACAGGGAGTTAAT
TCAGGAAGGAAAAATTTCAGGAATGCGTTTATTAGCCGGTAGTATCGCCCACGACCTGCGCACACCACTAGCGAGTATTC
ATTTGCAGGCAGAATTACAGGAAATGTTTGTTGAAAAACTTAAAAATCCTAAAGTACGTAAGCATCTGAAGGAAAGTCTT
CATAAGATCACTCGTGGTATTGAAATGAGTAATCAATTAATTAGCATGCAATTAAATAATATTCAGCGTGATAAATTCGA
TACTAAAGATTTTTTAATCTTACCGATTAAAGAGTTATTGGAAAGAGCTTTGGAGGAATATCCTTTAAAAAAAGGACAAA
AAGAATTAATTCATTTGAATTTGGAAACAAATTTTTCCATATGGATTGAGGAAGTAGCCTTCAAAAATTTAATCTGGAAT
CTATTAAAAAATAGCTTGGATTTTATCGATGAAATTGGAAAAGGCGAGATTACTATTTGGCTCGTTACTGGTGAGGAAAA
GGATGATTTTAATTATTTGCATATTAAGGATACGGCTAAGGGCATTAAAAATCCCGAAAAAATTTTTGAAAGTTTTTATT
CAAGTCGTAAGGGAGGAACAGGGGTAGGACTAGCATATTGCAAATTATTGATGACTGCTGCGGGCGGCGATATATTTTGT
AAGGGAAAGCCTAATGAGTATGCGCATTTTATTTTGAAATTTCCTAAAGTTGATTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(311-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

70.238

100

0.706