Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q7C01_RS31250 Genome accession   NZ_CP132975
Coordinates   7074451..7076379 (+) Length   642 a.a.
NCBI ID   WP_266463566.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7069451..7081379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS31235 (Q7C01_31235) - 7070679..7070984 (+) 306 WP_030836676.1 YtxH domain-containing protein -
  Q7C01_RS31240 (Q7C01_31240) - 7071159..7072607 (+) 1449 WP_184911552.1 FGGY-family carbohydrate kinase -
  Q7C01_RS31245 (Q7C01_31245) rcrP 7072718..7074451 (+) 1734 WP_266463564.1 ABC transporter ATP-binding protein Regulator
  Q7C01_RS31250 (Q7C01_31250) rcrQ 7074451..7076379 (+) 1929 WP_266463566.1 ABC transporter ATP-binding protein Regulator
  Q7C01_RS31255 (Q7C01_31255) - 7076534..7077829 (-) 1296 WP_266463569.1 RNA polymerase sigma factor -
  Q7C01_RS31260 (Q7C01_31260) dnaG 7077916..7079835 (-) 1920 WP_184911541.1 DNA primase -
  Q7C01_RS31265 (Q7C01_31265) - 7079883..7081148 (-) 1266 WP_266463573.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69640.02 Da        Isoelectric Point: 5.7095

>NTDB_id=797520 Q7C01_RS31250 WP_266463566.1 7074451..7076379(+) (rcrQ) [Streptomyces sp. FXY-T5]
MAGPMGRMMAGGGPDSRSLDFKGSGKRLVAQFRPERVTIYVLLLCVVLSVGLNVVGPKILGKATDLVFAGIVGRGMPEGA
TKEQVLDSMRQRGDGDVADMLRSTDFTPGEGIDFTAVGHVLLLALGVFTVAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDQRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGQLNAHIEEMYTGHALVKVFGRQEESARQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQGADPVPGLRPEELRGQVALE
HVSFRYDPDKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRKVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHEELLAGDGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=797520 Q7C01_RS31250 WP_266463566.1 7074451..7076379(+) (rcrQ) [Streptomyces sp. FXY-T5]
ATGGCGGGGCCCATGGGGCGGATGATGGCCGGGGGCGGCCCCGATTCCCGCTCGCTCGACTTCAAGGGGTCGGGCAAGCG
GCTCGTCGCGCAGTTCCGGCCGGAGCGCGTGACCATCTACGTGCTGCTGCTGTGCGTGGTGCTCAGCGTCGGCCTGAACG
TCGTCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCGGGCATCGTCGGGCGCGGCATGCCGGAGGGGGCG
ACCAAGGAGCAGGTCCTCGACTCGATGCGGCAGCGCGGGGACGGTGACGTCGCCGACATGCTGCGCAGCACCGACTTCAC
CCCGGGCGAGGGCATCGACTTCACCGCCGTCGGGCATGTGCTGCTGCTGGCGCTGGGTGTGTTCACGGTGGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTGAACCGGACCATGTTCCGGATGCGTGAGGACGTCCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACCAGCGCCAGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAACTCATCAACTCGGTGCTGACCATCATCGGCGTGCTCGCCATGATGT
TCTACGTCTCCTGGATCCTCGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTGGCCACACGGGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACGGGGCAGTTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCGGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTATGTGCTGGTCGCG
GTGGTCGGCGGGTTGCGGGTGGCCTCCGGCACGCTGTCGATCGGCGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCCATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCGGAGCGGGTCTTCGAGC
TGCTCGACGCGGAGGAGCAGGGCGCCGATCCGGTGCCGGGCCTGCGGCCCGAGGAGTTGCGCGGGCAGGTGGCGCTGGAG
CACGTGTCGTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTGTCGCTGAAGGTCGAGCCGGGGCACACGGTCGC
CATCGTCGGCCCCACGGGTGCCGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGACGTCACCGGTGGGCGCA
TCACCCTCGACGGCGTCGACATCGCGCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCGTCCCGGAAGGTGACCCGCGGGGAGATCGAGGAGGC
GGCCCGCGCCGCGCACGCGGACCGGTTCGTGCGGACGCTGCCGGACGGATACGACACGGTGATCGACGACGAGGGAACGG
GGGTCAGCGCGGGAGAGAAGCAGCTGATCACCATCGCCCGGGCGTTTCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCGGTCGACACGCGCACGGAGGTGCTGATCCAGAAGGCCATGGCGAAACTCGCCCACGGCCGCACGTCGTT
CGTCATCGCGCACCGGCTGTCGACGATCCGGGACGCCGACACGATCCTCGTGATGGAGAACGGGTCCATCGTGGAGCAGG
GCACGCACGAGGAGCTGCTGGCCGGGGACGGTGCCTACGCGCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAA
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.262

0.385