Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Q7C01_RS31245 Genome accession   NZ_CP132975
Coordinates   7072718..7074451 (+) Length   577 a.a.
NCBI ID   WP_266463564.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7067718..7079451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS31215 (Q7C01_31215) uppS 7068146..7070023 (+) 1878 WP_306689681.1 polyprenyl diphosphate synthase -
  Q7C01_RS31235 (Q7C01_31235) - 7070679..7070984 (+) 306 WP_030836676.1 YtxH domain-containing protein -
  Q7C01_RS31240 (Q7C01_31240) - 7071159..7072607 (+) 1449 WP_184911552.1 FGGY-family carbohydrate kinase -
  Q7C01_RS31245 (Q7C01_31245) rcrP 7072718..7074451 (+) 1734 WP_266463564.1 ABC transporter ATP-binding protein Regulator
  Q7C01_RS31250 (Q7C01_31250) rcrQ 7074451..7076379 (+) 1929 WP_266463566.1 ABC transporter ATP-binding protein Regulator
  Q7C01_RS31255 (Q7C01_31255) - 7076534..7077829 (-) 1296 WP_266463569.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62713.71 Da        Isoelectric Point: 5.5422

>NTDB_id=797519 Q7C01_RS31245 WP_266463564.1 7072718..7074451(+) (rcrP) [Streptomyces sp. FXY-T5]
MLIRLLRTCLRPYKRPIALLVLLQFLQTCATLYLPTLNADIIDQGVVNGDTGYILGYGGLMIGISLVQVVCNIGAVYYGA
RTASALGRDLRASVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGVCVTLIVRRLRPLFRSMQERLDSVNQVLREQITGNRVIRAFVRDEYEQQRFRKANTDLTDFALGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PSAPVRELRRHGHLEIRGAGFRYPGAEEPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVEVA
EIDPKLLAKTVGMVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=797519 Q7C01_RS31245 WP_266463564.1 7072718..7074451(+) (rcrP) [Streptomyces sp. FXY-T5]
GTGCTCATACGACTTCTGCGGACCTGTCTCAGGCCCTACAAGAGACCCATCGCTCTCCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACCAGGGCGTCGTGAACGGCGACACCGGCTACA
TCCTGGGCTACGGCGGCCTGATGATCGGCATCTCGCTGGTCCAGGTCGTGTGCAACATCGGCGCCGTGTACTACGGCGCC
CGTACGGCGTCGGCGCTGGGGCGGGACCTGCGGGCGTCCGTGTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTCGG
TCACTTCGGGGCGCCGTCGCTGATCACGCGGACGACGAACGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTCGCGCTCGGTCTCGATGTGCCGCTGTCCGGGGTG
CTGGTGGCGGTCGTACCGGTGCTGGGCGTCTGCGTGACGCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGAGCGGCTGGACTCGGTGAACCAGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGTGCCTTCGTCCGGGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCCAACACCGATCTCACCGACTTCGCGCTGGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCACACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACGGCGTTCCTGGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCCTCCAGCGTCGTGCCG
CCGTCGGCGCCGGTGCGGGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGGGGCGGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTGCGGGGCGTGGACCTGGTCGCCAGGCCGGGTGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTCCCGCGGCTGTTCGACGCGACCGATGGGCAGGTGCTCGTCGACGGTGTCGAGGTGGCG
GAGATCGACCCCAAGCTGCTCGCGAAGACCGTCGGGATGGTGCCGCAGAAGCCGTACCTGTTCGCGGGGACCGTGGCGAC
CAACCTGCGCTACGGCAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGGAGCGGTTGGAGAACGGTCTCGACTCGCCGATCGCACAGGGCGGAACGAATGTCTCGGGTGGTCAGCGCCAACGGCTC
GCCATCGCCCGGACGCTGGTGCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCCGCCCTGCGGGCCGCGCTGGGGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCGCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.408

100

0.385