Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PZB78_RS18695 Genome accession   NZ_CP119073
Coordinates   3637399..3638511 (+) Length   370 a.a.
NCBI ID   WP_024123582.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3632399..3643511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS18670 (PZB78_18645) rnpA 3633100..3633453 (-) 354 WP_024123579.1 ribonuclease P protein component -
  PZB78_RS18675 (PZB78_18650) rpmH 3633601..3633735 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  PZB78_RS18680 (PZB78_18655) dnaA 3634368..3635708 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  PZB78_RS18685 (PZB78_18660) dnaN 3635900..3637036 (+) 1137 WP_024123581.1 DNA polymerase III subunit beta -
  PZB78_RS18690 (PZB78_18665) rlbA 3637168..3637383 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  PZB78_RS18695 (PZB78_18670) recF 3637399..3638511 (+) 1113 WP_024123582.1 DNA replication/repair protein RecF Machinery gene
  PZB78_RS18700 (PZB78_18675) remB 3638529..3638774 (+) 246 WP_024123583.1 extracellular matrix regulator RemB -
  PZB78_RS18705 (PZB78_18680) gyrB 3638830..3640746 (+) 1917 WP_254518329.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  PZB78_RS18710 (PZB78_18685) gyrA 3640958..3643429 (+) 2472 WP_024123585.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42434.44 Da        Isoelectric Point: 7.0882

>NTDB_id=797514 PZB78_RS18695 WP_024123582.1 3637399..3638511(+) (recF) [Bacillus halotolerans strain SW207]
MYIQNLELTSYRNYEHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=797514 PZB78_RS18695 WP_024123582.1 3637399..3638511(+) (recF) [Bacillus halotolerans strain SW207]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTATGAACATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATTGGAGAAAATGCTCAGGGGAAAACAAACCTCATGGAAGCGATCTATGTCTTGTCCATGGCAAAATCGCATCGGA
CTTCAAATGACAAAGAACTTATCCGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAGCTCAGCCAGTA
TGTCGGCGCCCTCAACACCATCATGTTTGCACCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGACGGAGAT
TTCTTGACATGGAAATCGGCCAAGTTTCTCCCGTCTACCTGTATGACCTTTCTCTTTACCAGAAGATTCTTTCCCAGCGA
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTCTGACTGATCAGCTTATTGA
AGTTGCCGCAAAAGTCGTCGTAAAACGTCTGCAGTTCACGGCACAGCTCGAAAAATGGGCGCAGCCTATCCATTCGGGCA
TCTCAAGAGGGCTTGAGGAATTGACGCTGAAGTACCATACGGCGCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGCGTCACGCTGTCTGGACCTCATCG
GGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGGTCTCAAGGACAGCAGCGGACGACGGCATTAT
CCCTTAAGCTGGCTGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTGCTGAGT
GAACTGGATGATTATCGCCAATCGCACTTGCTTCATACCATCCAGGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGGCAAGCAGGAATGTTCCGTGTGCAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.108

100

0.981