Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PZB78_RS13495 Genome accession   NZ_CP119073
Coordinates   2612485..2613129 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain SW207     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2607485..2618129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS13460 (PZB78_13435) - 2608678..2609109 (+) 432 WP_255001771.1 Na(+)/H(+) antiporter subunit B -
  PZB78_RS13465 (PZB78_13440) - 2609109..2609450 (+) 342 WP_024122674.1 Na(+)/H(+) antiporter subunit C -
  PZB78_RS13470 (PZB78_13445) - 2609443..2610924 (+) 1482 WP_151174477.1 Na+/H+ antiporter subunit D -
  PZB78_RS13475 (PZB78_13450) - 2610930..2611406 (+) 477 WP_185848675.1 Na+/H+ antiporter subunit E -
  PZB78_RS13480 (PZB78_13455) - 2611406..2611690 (+) 285 WP_151174478.1 Na(+)/H(+) antiporter subunit F1 -
  PZB78_RS13485 (PZB78_13460) mnhG 2611674..2612048 (+) 375 WP_059292644.1 monovalent cation/H(+) antiporter subunit G -
  PZB78_RS13490 (PZB78_13465) - 2612087..2612467 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  PZB78_RS13495 (PZB78_13470) comA 2612485..2613129 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  PZB78_RS13500 (PZB78_13475) comP 2613210..2615516 (-) 2307 WP_254517859.1 histidine kinase Regulator
  PZB78_RS13505 (PZB78_13480) comX 2615532..2615753 (-) 222 WP_059292642.1 competence pheromone ComX -
  PZB78_RS13510 (PZB78_13485) - 2615750..2616619 (-) 870 WP_101864136.1 polyprenyl synthetase family protein -
  PZB78_RS13515 (PZB78_13490) degQ 2616804..2616944 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  PZB78_RS13520 (PZB78_13495) - 2617405..2617773 (+) 369 WP_106019478.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=797497 PZB78_RS13495 WP_024122680.1 2612485..2613129(-) (comA) [Bacillus halotolerans strain SW207]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=797497 PZB78_RS13495 WP_024122680.1 2612485..2613129(-) (comA) [Bacillus halotolerans strain SW207]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATAGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCCGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986