Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PZB78_RS08855 Genome accession   NZ_CP119073
Coordinates   1754513..1755133 (+) Length   206 a.a.
NCBI ID   WP_044155259.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1749513..1760133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS08815 (PZB78_08780) - 1750651..1751157 (-) 507 WP_106020332.1 PTS glucose transporter subunit IIA -
  PZB78_RS08820 (PZB78_08785) - 1751294..1751713 (+) 420 WP_106020010.1 Hsp20/alpha crystallin family protein -
  PZB78_RS08825 (PZB78_08790) - 1751735..1752109 (-) 375 WP_024121828.1 YppG family protein -
  PZB78_RS08830 (PZB78_08795) - 1752297..1752485 (+) 189 WP_254517677.1 YppF family protein -
  PZB78_RS08835 (PZB78_08800) - 1752520..1752891 (-) 372 WP_024121830.1 YppE family protein -
  PZB78_RS08840 (PZB78_08805) - 1752937..1753182 (-) 246 WP_095713163.1 DUF5446 family protein -
  PZB78_RS08845 (PZB78_08810) sspM 1753380..1753484 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  PZB78_RS08850 (PZB78_08815) - 1753510..1754472 (-) 963 WP_254517678.1 DUF2515 domain-containing protein -
  PZB78_RS08855 (PZB78_08820) recU 1754513..1755133 (+) 621 WP_044155259.1 Holliday junction resolvase RecU Machinery gene
  PZB78_RS08860 (PZB78_08825) - 1755155..1757899 (+) 2745 WP_188323086.1 PBP1A family penicillin-binding protein -
  PZB78_RS08865 (PZB78_08830) - 1757973..1758467 (-) 495 WP_254517680.1 YpoC family protein -
  PZB78_RS08870 (PZB78_08835) nth 1758464..1759123 (-) 660 WP_010334708.1 endonuclease III -
  PZB78_RS08875 (PZB78_08840) dnaD 1759142..1759840 (-) 699 WP_185848882.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23935.07 Da        Isoelectric Point: 9.6373

>NTDB_id=797472 PZB78_RS08855 WP_044155259.1 1754513..1755133(+) (recU) [Bacillus halotolerans strain SW207]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=797472 PZB78_RS08855 WP_044155259.1 1754513..1755133(+) (recU) [Bacillus halotolerans strain SW207]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGTGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAACATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCAAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

96.117

100

0.961