Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   PZB78_RS08050 Genome accession   NZ_CP119073
Coordinates   1618831..1619961 (+) Length   376 a.a.
NCBI ID   WP_188323045.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613831..1624961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS07995 (PZB78_07965) - 1613916..1614167 (-) 252 Protein_1562 hypothetical protein -
  PZB78_RS08000 (PZB78_07970) - 1614238..1614417 (+) 180 WP_404841010.1 hypothetical protein -
  PZB78_RS08005 (PZB78_07975) - 1614505..1615128 (-) 624 WP_024571441.1 hypothetical protein -
  PZB78_RS08010 (PZB78_07980) - 1615630..1615860 (+) 231 WP_127696872.1 hypothetical protein -
  PZB78_RS08015 - 1615868..1615927 (-) 60 WP_255004945.1 hypothetical protein -
  PZB78_RS08020 (PZB78_07985) - 1616043..1616189 (-) 147 WP_316961074.1 UPF0715 family protein -
  PZB78_RS08025 (PZB78_07990) - 1616500..1616645 (-) 146 Protein_1568 XRE family transcriptional regulator -
  PZB78_RS08030 (PZB78_07995) - 1616917..1617393 (-) 477 WP_223257246.1 hypothetical protein -
  PZB78_RS08035 (PZB78_08000) - 1617487..1617720 (-) 234 WP_106021718.1 hypothetical protein -
  PZB78_RS08040 (PZB78_08005) - 1618068..1618328 (+) 261 WP_081638323.1 hypothetical protein -
  PZB78_RS08045 - 1618653..1618697 (+) 45 WP_372588338.1 hypothetical protein -
  PZB78_RS08050 (PZB78_08015) rapC 1618831..1619961 (+) 1131 WP_188323045.1 tetratricopeptide repeat protein Regulator
  PZB78_RS08055 (PZB78_08020) - 1619951..1620094 (+) 144 WP_024121692.1 hypothetical protein -
  PZB78_RS08060 (PZB78_08025) - 1620123..1621010 (-) 888 Protein_1575 DNA polymerase thumb domain-containing protein -
  PZB78_RS08065 (PZB78_08030) ppsA 1621304..1623907 (-) 2604 WP_106021716.1 phosphoenolpyruvate synthase -
  PZB78_RS08070 (PZB78_08035) - 1624419..1624503 (+) 85 Protein_1577 putative holin-like toxin -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44305.06 Da        Isoelectric Point: 6.1971

>NTDB_id=797471 PZB78_RS08050 WP_188323045.1 1618831..1619961(+) (rapC) [Bacillus halotolerans strain SW207]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGNEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=797471 PZB78_RS08050 WP_188323045.1 1618831..1619961(+) (rapC) [Bacillus halotolerans strain SW207]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAAACGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452