Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   Q7C01_RS02415 Genome accession   NZ_CP132975
Coordinates   511892..513301 (-) Length   469 a.a.
NCBI ID   WP_062928383.1    Uniprot ID   A0A143C3L3
Organism   Streptomyces sp. FXY-T5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 506892..518301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS02395 (Q7C01_02395) - 508080..508736 (+) 657 WP_266469952.1 response regulator transcription factor -
  Q7C01_RS02400 (Q7C01_02400) - 508904..509545 (-) 642 WP_266469950.1 phosphatase PAP2 family protein -
  Q7C01_RS02405 (Q7C01_02405) - 509721..510578 (+) 858 WP_266469948.1 hypothetical protein -
  Q7C01_RS02410 (Q7C01_02410) disA 510687..511811 (-) 1125 WP_266469946.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  Q7C01_RS02415 (Q7C01_02415) radA/sms 511892..513301 (-) 1410 WP_062928383.1 DNA repair protein RadA Machinery gene
  Q7C01_RS02420 (Q7C01_02420) - 513498..515228 (+) 1731 WP_266469941.1 hypothetical protein -
  Q7C01_RS02425 (Q7C01_02425) - 515237..516046 (-) 810 WP_266469940.1 hypothetical protein -
  Q7C01_RS02430 (Q7C01_02430) - 516118..517050 (+) 933 WP_266469939.1 Ppx/GppA phosphatase family protein -
  Q7C01_RS02435 (Q7C01_02435) - 517133..517957 (+) 825 WP_030845804.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49526.63 Da        Isoelectric Point: 7.7222

>NTDB_id=797468 Q7C01_RS02415 WP_062928383.1 511892..513301(-) (radA/sms) [Streptomyces sp. FXY-T5]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVLEVADIGDALRVLPRSRRREAPQDEEGRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=797468 Q7C01_RS02415 WP_062928383.1 511892..513301(-) (radA/sms) [Streptomyces sp. FXY-T5]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACGGAATGCGGCTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTGCGTACGACGGCACCGGGCC
GGGTCACCACCTCCGCCCTGCCCATCGGCCAGGTGGACGGCCGCCAGGCCACCGCCCGGCCCACCGGCGTGCCCGAACTG
GACCGCGTGCTCGGCGGCGGGTTGGTCCCCGGCGCGGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
CCTGCTGGACGTGGCGGCCAAGTCCGCGAGCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGGCGAGTCAGG
TCCGGCTGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTGGCGGCCGAGACGGATCTGGCCGCGGTGCTG
GGCCACTTGGACGCGGTCAAGCCGTCGCTGCTGATCATGGACTCCGTGCAGACGGTGGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTGCGGGAGGTCGCCGGAGCCCTCATCCGCGCCTCCAAGGAACGCGGCATGTCCACGCTGC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCCCGCCTGCGTCTCGTGCGAGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGGCTCTTCCTGACCCGCCGGGCCGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAAGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCGCGCCGCACCACCTCGGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCGGTGCTGGAACAGCGGGGGCG
GATCAGCGCCTTGGGCAAAAGGGACATCTACTCCGCGACGGTCGGCGGGGTGAAGCTCAGCGAGCCGGCCGCGGACCTGG
CCGTCGCCCTCGCCCTGGCGAGCGCGGCGAGTGACACACCTCTCCCGAAGAACCTCGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTGAGACGGGTCACCGGAGTGCAGCGCAGACTGGCCGAGGCCCACCGTCTGGGCTTCACGCACGCGCTGGT
CCCGGGGGATCCGGGCAAGGTCCCGGCGGGCATGAAGGTGCTGGAAGTCGCGGACATAGGGGACGCCCTGCGGGTCCTTC
CCCGCTCCCGTCGCAGAGAGGCCCCACAGGACGAGGAGGGTCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143C3L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.375

0.418
  radA Streptococcus pneumoniae D39

43.43

95.736

0.416
  radA Streptococcus pneumoniae R6

43.43

95.736

0.416
  radA Streptococcus pneumoniae Rx1

43.43

95.736

0.416
  radA Streptococcus mitis SK321

43.43

95.736

0.416
  radA Streptococcus mitis NCTC 12261

43.43

95.736

0.416
  radA Streptococcus pneumoniae TIGR4

43.43

95.736

0.416