Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PZB78_RS05385 Genome accession   NZ_CP119073
Coordinates   1021411..1021986 (+) Length   191 a.a.
NCBI ID   WP_024121230.1    Uniprot ID   A0A9Q4HNH0
Organism   Bacillus halotolerans strain SW207     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016411..1026986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS05355 (PZB78_05335) dapD 1016583..1017293 (+) 711 WP_024121226.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  PZB78_RS05360 (PZB78_05340) - 1017364..1018488 (+) 1125 WP_106022217.1 N-acetyldiaminopimelate deacetylase -
  PZB78_RS05365 (PZB78_05345) - 1018549..1018794 (+) 246 WP_010334064.1 YkuS family protein -
  PZB78_RS05370 (PZB78_05350) - 1018829..1019632 (-) 804 WP_024121228.1 mechanosensitive ion channel family protein -
  PZB78_RS05375 (PZB78_05355) ahpA 1019877..1020419 (+) 543 WP_010334066.1 biofilm-specific peroxidase AhpA -
  PZB78_RS05380 (PZB78_05360) ykuV 1020501..1020959 (+) 459 WP_024121229.1 thiol-disulfide oxidoreductase YkuV -
  PZB78_RS05385 (PZB78_05365) rok 1021411..1021986 (+) 576 WP_024121230.1 transcriptional regulator Rok Regulator
  PZB78_RS05390 (PZB78_05370) - 1022028..1022993 (-) 966 WP_024121231.1 hypothetical protein -
  PZB78_RS05395 (PZB78_05375) - 1023126..1023725 (+) 600 WP_024121232.1 molybdenum cofactor guanylyltransferase -
  PZB78_RS05400 (PZB78_05380) - 1023777..1024796 (+) 1020 WP_103671626.1 MoeB/ThiF family adenylyltransferase -
  PZB78_RS05405 (PZB78_05385) glp 1024814..1026106 (+) 1293 WP_106020378.1 gephyrin-like molybdotransferase Glp -
  PZB78_RS05410 (PZB78_05390) mobB 1026067..1026588 (+) 522 WP_254518213.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21761.69 Da        Isoelectric Point: 9.8783

>NTDB_id=797465 PZB78_RS05385 WP_024121230.1 1021411..1021986(+) (rok) [Bacillus halotolerans strain SW207]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSTSETKKEFRSERKTDSLPVLAELAAQEIRSYQPPS
QQQSAQPQLQSISSLPAGIPDGATRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGDIESAESATE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=797465 PZB78_RS05385 WP_024121230.1 1021411..1021986(+) (rok) [Bacillus halotolerans strain SW207]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGATTAGAACAATTAAATGAAGCTGAAGTAAAAGTCATTCGTGAATATCA
AATTGAACGCGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCACTTCCGAAACGAAAAAGGAGTTCC
GTTCTGAAAGAAAAACTGACTCTCTGCCAGTTCTCGCCGAGCTTGCAGCTCAGGAAATCAGAAGCTATCAGCCGCCATCA
CAGCAGCAGTCCGCCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGATGGAGCGACTAGAAGAAG
AAGAGGAACGGCAAGACCGGGATCTAAAGCAGCTAAACTGCGTGAAGCGGCTATTAAAACATTAAAACGCCACAACGCGG
CAATTAAGAGCTCCGAACTTCAAAAAGAGATTGAAAAGGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGTTTAATTAAAATGTATCCGGAAGTGAAAAAACCGTATCGCGGCCAGTACATTTTAGAGGGTGACATCGAATCAGCTGA
ATCAGCAACAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

94.764

100

0.948