Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PZB78_RS05280 Genome accession   NZ_CP119073
Coordinates   1004810..1005274 (-) Length   154 a.a.
NCBI ID   WP_151174983.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 999810..1010274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS05260 (PZB78_05240) kinA 1000271..1002105 (+) 1835 Protein_1016 sporulation histidine kinase KinA -
  PZB78_RS05265 (PZB78_05245) - 1002102..1003285 (-) 1184 Protein_1017 aminotransferase A -
  PZB78_RS05270 (PZB78_05250) - 1003487..1003648 (-) 162 WP_003238943.1 hypothetical protein -
  PZB78_RS05275 (PZB78_05255) cheV 1003856..1004767 (+) 912 WP_024121210.1 chemotaxis protein CheV -
  PZB78_RS05280 (PZB78_05260) kre 1004810..1005274 (-) 465 WP_151174983.1 YkyB family protein Regulator
  PZB78_RS05285 (PZB78_05265) - 1005400..1006692 (-) 1293 WP_127695343.1 MFS transporter -
  PZB78_RS05290 (PZB78_05270) - 1006768..1007262 (-) 495 WP_081638296.1 L,D-transpeptidase family protein -
  PZB78_RS05295 (PZB78_05275) - 1007320..1008180 (-) 861 WP_127695341.1 metallophosphoesterase -
  PZB78_RS05300 (PZB78_05280) fadH 1008325..1009089 (+) 765 WP_024121215.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17868.73 Da        Isoelectric Point: 10.4658

>NTDB_id=797464 PZB78_RS05280 WP_151174983.1 1004810..1005274(-) (kre) [Bacillus halotolerans strain SW207]
MDDHAYSKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQAYRNPKAQMSLTKAKHLLQKYVGMKEKPLVTNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=797464 PZB78_RS05280 WP_151174983.1 1004810..1005274(-) (kre) [Bacillus halotolerans strain SW207]
ATGGACGACCATGCATACTCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAGGCGTACCGAAA
TCCAAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTATTGCAAAAATACGTCGGCATGAAAGAAAAGCCGCTTGTGA
CGAATCGCCAGCAGCCCGCTTATCATAAGCCTGTCTTTAAGAAACTCGGCGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

97.403

100

0.974