Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   PZB78_RS03645 Genome accession   NZ_CP119073
Coordinates   709043..709996 (+) Length   317 a.a.
NCBI ID   WP_024120903.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 704043..714996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS03620 (PZB78_03605) argF 705857..706814 (+) 958 Protein_689 ornithine carbamoyltransferase -
  PZB78_RS03625 (PZB78_03610) - 706900..707079 (+) 180 WP_003239319.1 YjzC family protein -
  PZB78_RS03630 (PZB78_03615) - 707125..707310 (-) 186 WP_010333727.1 YjzD family protein -
  PZB78_RS03635 (PZB78_03620) - 707569..708306 (+) 738 WP_024120901.1 hypothetical protein -
  PZB78_RS03640 (PZB78_03625) - 708389..708952 (+) 564 WP_106022355.1 hypothetical protein -
  PZB78_RS03645 (PZB78_03630) med 709043..709996 (+) 954 WP_024120903.1 BMP family ABC transporter substrate-binding protein Regulator
  PZB78_RS03650 (PZB78_03635) comZ 710011..710202 (+) 192 WP_127695478.1 ComG operon transcriptional repressor ComZ Regulator
  PZB78_RS03655 (PZB78_03640) - 710232..710462 (-) 231 WP_081638273.1 hypothetical protein -
  PZB78_RS03660 (PZB78_03645) fabH 710628..711566 (+) 939 WP_010333732.1 beta-ketoacyl-ACP synthase III -
  PZB78_RS03665 (PZB78_03650) fabF 711589..712827 (+) 1239 WP_024120905.1 beta-ketoacyl-ACP synthase II -
  PZB78_RS03670 (PZB78_03655) - 712907..713692 (+) 786 WP_127695474.1 DUF2268 domain-containing protein -
  PZB78_RS03675 (PZB78_03660) appD 713882..714868 (+) 987 WP_127695472.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35285.95 Da        Isoelectric Point: 4.9707

>NTDB_id=797455 PZB78_RS03645 WP_024120903.1 709043..709996(+) (med) [Bacillus halotolerans strain SW207]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLFGHGSEYEEVFNLVSEDYPDMQFVISNAKAKADNVTSVHLSGEAIGFFGGMTAAHMSKTNQVGVIASFSWQ
PEVDGFIKGAKYENPNIEVNTKYTDHWDDDSTAVNLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFDKGTLKGGDHYYDLKSRVVEMGTFSPLVDKAFQKKIAKLVKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=797455 PZB78_RS03645 WP_024120903.1 709043..709996(+) (med) [Bacillus halotolerans strain SW207]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCTAAATACAATGTGGACGTCTACTATAAAGAAGGCGTAAAAACAGATGAAGATATTATAAATGCGATTGAAGAT
TTTCATAAGCGCGGCGTCAATCTCCTCTTTGGCCATGGAAGTGAGTATGAAGAAGTATTTAACTTGGTCAGTGAAGACTA
TCCGGATATGCAGTTTGTGATTTCAAATGCAAAAGCAAAAGCGGACAATGTCACAAGCGTCCATCTCAGCGGGGAAGCAA
TCGGCTTTTTCGGCGGAATGACCGCTGCCCATATGTCAAAAACCAATCAGGTCGGCGTCATCGCTTCTTTTTCATGGCAG
CCAGAAGTGGACGGCTTTATAAAAGGGGCTAAGTACGAAAATCCTAATATAGAAGTGAATACAAAATATACGGATCACTG
GGATGATGATTCGACTGCGGTGAACCTTTATCAAAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCTGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTATATGCGATCGGCTATGTCACAGATCAATCCGATCTT
GGCGAAAACACCGTGTTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATTATAGCTGAGCAATTCGACAAAGG
GACTTTAAAAGGCGGCGATCACTATTACGATCTGAAAAGCCGAGTTGTCGAAATGGGAACCTTCAGTCCGCTTGTGGACA
AAGCTTTTCAGAAAAAAATCGCCAAACTGGTCAAAACATATAACAAAACAGGTGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

93.375

100

0.934