Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PXV98_RS16015 Genome accession   NZ_CP119048
Coordinates   3253653..3254267 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain 26019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3248653..3259267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXV98_RS16000 (PXV98_16000) helD 3248877..3250931 (-) 2055 WP_016149881.1 DNA helicase IV -
  PXV98_RS16005 (PXV98_16005) - 3251057..3251503 (+) 447 WP_003035892.1 YccF domain-containing protein -
  PXV98_RS16010 (PXV98_16010) yccS 3251522..3253675 (+) 2154 WP_086529948.1 YccS family putative transporter -
  PXV98_RS16015 (PXV98_16015) sxy/tfoX 3253653..3254267 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  PXV98_RS16020 (PXV98_16020) sulA 3254485..3254994 (+) 510 WP_057063928.1 SOS-induced cell division inhibitor SulA -
  PXV98_RS16025 (PXV98_16025) ompA 3255352..3256410 (+) 1059 WP_003836839.1 porin OmpA -
  PXV98_RS16030 (PXV98_16030) matP 3256500..3256952 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  PXV98_RS16035 (PXV98_16035) - 3257138..3258898 (+) 1761 WP_283903214.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=797420 PXV98_RS16015 WP_003035889.1 3253653..3254267(-) (sxy/tfoX) [Citrobacter freundii strain 26019]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=797420 PXV98_RS16015 WP_003035889.1 3253653..3254267(-) (sxy/tfoX) [Citrobacter freundii strain 26019]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686