Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RBB55_RS12550 Genome accession   NZ_CP132915
Coordinates   2596443..2597384 (-) Length   313 a.a.
NCBI ID   WP_001159456.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A207     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2591443..2602384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS12535 (RBB55_12565) bauB 2593754..2594722 (-) 969 WP_001104126.1 siderophore-binding periplasmic lipoprotein BauB -
  RBB55_RS12540 (RBB55_12570) bauE 2594729..2595499 (-) 771 WP_000582117.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  RBB55_RS12545 (RBB55_12575) bauC 2595496..2596443 (-) 948 WP_001223286.1 ferric acinetobactin ABC transporter permease subunit BauC -
  RBB55_RS12550 (RBB55_12580) ceuB 2596443..2597384 (-) 942 WP_001159456.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  RBB55_RS12555 (RBB55_12585) - 2597384..2597515 (-) 132 WP_001218004.1 hypothetical protein -
  RBB55_RS12560 (RBB55_12590) basB 2598016..2600043 (+) 2028 WP_002126571.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  RBB55_RS12565 (RBB55_12595) basA 2600114..2601961 (-) 1848 WP_046127856.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33962.04 Da        Isoelectric Point: 8.4665

>NTDB_id=797324 RBB55_RS12550 WP_001159456.1 2596443..2597384(-) (ceuB) [Acinetobacter baumannii strain A207]
MQFGLFCIFIILCICSLLLGAEPIQWTTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLICDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=797324 RBB55_RS12550 WP_001159456.1 2596443..2597384(-) (ceuB) [Acinetobacter baumannii strain A207]
ATGCAATTCGGCTTATTCTGTATTTTTATCATTTTATGTATTTGCTCATTATTGCTCGGGGCTGAGCCAATACAGTGGAC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATCCCTCGTTTAATCACTATTGTGCTCA
CCGGTATCGGGTTGGCGGTATGTGGCGTCATCTTGCAGCATATTGTGCGTAACAAGTTTGTTGAACCGGAAACTTCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCGTTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCCAGCTTAATTTATATCGCAATTATTCGCCGGATCCGTTTTAGAAATACGGTTTTAG
TACCGGTTATTGGCTTGATGTACGGCAGTGTACTGAGCGCTTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGTCATTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTTGCACACCGCTTTACCGTGATTGGTATGGGTGAAGAGATGGCTTCTAGCCTAGGACTTA
GTTATGCAGCTATAGCCGCTATTGGTTTAATACTGGTTGCCATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTGCCCAATTTGGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCCATTGTGGC
TTTGGGTGGGGCGTCTCTATTACTGATTTGCGACATTCTTGGTCGCTCAATCATTTATCCATTTGAAGTGCCAATTGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.257

94.569

0.419