Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RBB55_RS08055 Genome accession   NZ_CP132915
Coordinates   1663754..1664389 (+) Length   211 a.a.
NCBI ID   WP_004835307.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A207     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1658754..1669389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBB55_RS08030 (RBB55_08045) - 1659594..1660607 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  RBB55_RS08035 (RBB55_08050) murU 1660607..1661296 (+) 690 WP_000646466.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RBB55_RS08040 (RBB55_08055) rsmG 1661384..1662016 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RBB55_RS08045 (RBB55_08060) - 1662038..1662820 (+) 783 WP_004835310.1 ParA family protein -
  RBB55_RS08050 (RBB55_08065) - 1662817..1663704 (+) 888 WP_004835309.1 ParB/RepB/Spo0J family partition protein -
  RBB55_RS08055 (RBB55_08070) exbB 1663754..1664389 (+) 636 WP_004835307.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RBB55_RS08060 (RBB55_08075) - 1664405..1664833 (+) 429 WP_000669686.1 biopolymer transporter ExbD -
  RBB55_RS08065 (RBB55_08080) msbA 1664830..1666557 (+) 1728 WP_004835304.1 lipid A export permease/ATP-binding protein MsbA -
  RBB55_RS08070 (RBB55_08085) lpxK 1666560..1667570 (+) 1011 WP_038341979.1 tetraacyldisaccharide 4'-kinase -
  RBB55_RS08075 (RBB55_08090) kdsB 1667580..1668341 (+) 762 WP_004835301.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RBB55_RS08080 (RBB55_08095) - 1668353..1669333 (+) 981 WP_004835299.1 DNA polymerase III, delta' subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23210.15 Da        Isoelectric Point: 6.4861

>NTDB_id=797309 RBB55_RS08055 WP_004835307.1 1663754..1664389(+) (exbB) [Acinetobacter baumannii strain A207]
MWELVKAGGWLMLPLILCSILIVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=797309 RBB55_RS08055 WP_004835307.1 1663754..1664389(+) (exbB) [Acinetobacter baumannii strain A207]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAATCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTCATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393