Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RA292_RS20165 Genome accession   NZ_CP132912
Coordinates   3921852..3922646 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3916852..3927646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS20140 - 3917966..3918649 (-) 684 WP_024573086.1 response regulator transcription factor -
  RA292_RS20145 - 3918861..3919760 (+) 900 WP_029318544.1 PepSY domain-containing protein -
  RA292_RS20150 - 3919921..3920421 (+) 501 WP_029318543.1 PepSY domain-containing protein -
  RA292_RS20155 - 3920418..3920548 (-) 131 Protein_3942 hypothetical protein -
  RA292_RS20160 htrA 3920568..3921770 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  RA292_RS20165 vicX 3921852..3922646 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  RA292_RS20170 walI 3922668..3923510 (-) 843 WP_029318542.1 WalRK two-component regulatory system regulator WalI -
  RA292_RS20175 walH 3923497..3924864 (-) 1368 WP_029318541.1 WalRK two-component regulatory system regulator WalH -
  RA292_RS20180 walK 3924854..3926689 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  RA292_RS20185 walR 3926697..3927404 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=797271 RA292_RS20165 WP_003226939.1 3921852..3922646(-) (vicX) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=797271 RA292_RS20165 WP_003226939.1 3921852..3922646(-) (vicX) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AACGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTAAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGAATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCCGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53