Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RA292_RS19760 Genome accession   NZ_CP132912
Coordinates   3841674..3842363 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3836674..3847363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS19740 yxeA 3837579..3837926 (-) 348 WP_003227084.1 YxeA family protein -
  RA292_RS19745 yxdM 3837940..3839808 (-) 1869 WP_003244410.1 ABC transporter permease YxdM -
  RA292_RS19750 yxdL 3839783..3840556 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  RA292_RS19755 yxdK 3840700..3841677 (-) 978 WP_003243885.1 two-component system sensor histidine kinase YxdK -
  RA292_RS19760 braR 3841674..3842363 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  RA292_RS19765 iolJ 3842471..3843343 (-) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  RA292_RS19770 iolI 3843364..3844200 (-) 837 WP_032730291.1 2-keto-myo-inositol isomerase -
  RA292_RS19775 iolH 3844286..3845155 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  RA292_RS19780 iolG 3845175..3846209 (-) 1035 WP_032730288.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=797268 RA292_RS19760 WP_003243527.1 3841674..3842363(-) (braR) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=797268 RA292_RS19760 WP_003243527.1 3841674..3842363(-) (braR) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGTGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406