Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RA292_RS18230 Genome accession   NZ_CP132912
Coordinates   3540262..3541395 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3535262..3546395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS18190 ywnA 3535438..3535839 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  RA292_RS18195 ureC 3535974..3537683 (-) 1710 WP_003243090.1 urease subunit alpha -
  RA292_RS18200 ureB 3537680..3538054 (-) 375 WP_003227726.1 urease subunit beta -
  RA292_RS18205 ureA 3538051..3538368 (-) 318 WP_003227724.1 urease subunit gamma -
  RA292_RS18210 - 3538549..3538713 (-) 165 WP_015649919.1 hypothetical protein -
  RA292_RS20570 - 3538886..3539068 (-) 183 WP_003227720.1 transporter substrate-binding protein -
  RA292_RS18220 csbD 3539366..3539554 (-) 189 WP_003227718.1 stress response protein CsbD -
  RA292_RS18225 - 3539627..3540106 (-) 480 WP_003244390.1 hypothetical protein -
  RA292_RS18230 rapC 3540262..3541395 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  RA292_RS18235 moaA 3541587..3542612 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  RA292_RS18240 fdhD 3542628..3543416 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  RA292_RS18245 - 3543662..3543823 (-) 162 WP_003227706.1 hypothetical protein -
  RA292_RS18250 ywmD 3543917..3544591 (-) 675 WP_003243553.1 VWA domain-containing protein -
  RA292_RS18255 - 3544644..3544784 (-) 141 WP_003227702.1 hypothetical protein -
  RA292_RS18260 ywmC 3544915..3545598 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=797261 RA292_RS18230 WP_003227715.1 3540262..3541395(-) (rapC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=797261 RA292_RS18230 WP_003227715.1 3540262..3541395(-) (rapC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424