Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RA292_RS12420 Genome accession   NZ_CP132912
Coordinates   2432714..2433841 (+) Length   375 a.a.
NCBI ID   WP_004398842.1    Uniprot ID   P45943
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2427714..2438841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS12390 - 2428290..2428468 (-) 179 Protein_2416 hypothetical protein -
  RA292_RS12395 arsC 2428823..2429242 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  RA292_RS12400 acr3 2429254..2430294 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  RA292_RS12405 arsK 2430317..2430757 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  RA292_RS12410 arsR 2430818..2431135 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  RA292_RS12415 yqcI 2431507..2432271 (-) 765 WP_004398670.1 YqcI/YcgG family protein -
  RA292_RS12420 rapC 2432714..2433841 (+) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE Regulator
  RA292_RS12425 phrE 2433831..2433965 (+) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  RA292_RS12430 - 2434075..2434233 (+) 159 WP_003245945.1 hypothetical protein -
  RA292_RS12435 yqcG 2434603..2436198 (+) 1596 WP_004399034.1 LXG family T7SS effector endonuclease toxin YqcG -
  RA292_RS12440 yqcF 2436213..2436791 (+) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  RA292_RS12445 - 2436909..2437055 (+) 147 WP_009967791.1 hypothetical protein -
  RA292_RS12450 - 2437052..2437414 (-) 363 WP_003229947.1 hypothetical protein -
  RA292_RS12455 - 2437430..2437909 (-) 480 WP_004399085.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44636.38 Da        Isoelectric Point: 7.3392

>NTDB_id=797227 RA292_RS12420 WP_004398842.1 2432714..2433841(+) (rapC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=797227 RA292_RS12420 WP_004398842.1 2432714..2433841(+) (rapC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(184-246)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45943

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384