Detailed information    

insolico Bioinformatically predicted

Overview


Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PYU99_RS18975 Genome accession   NZ_CP118993
Coordinates   4131386..4132825 (-) Length   479 a.a.
NCBI ID   WP_182787431.1    Uniprot ID   -
Organism   Aeromonas media strain K521     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 4126386..4137825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYU99_RS18945 (PYU99_18945) degS 4127129..4128250 (+) 1122 WP_041204883.1 outer membrane-stress sensor serine endopeptidase DegS -
  PYU99_RS18950 (PYU99_18950) - 4128353..4129410 (+) 1058 Protein_3655 PTS sugar transporter subunit IIA -
  PYU99_RS18955 (PYU99_18955) npr 4129429..4129701 (-) 273 WP_005331359.1 PTS phosphocarrier protein NPr -
  PYU99_RS18960 (PYU99_18960) rapZ 4129722..4130588 (-) 867 WP_139438909.1 RNase adapter RapZ -
  PYU99_RS18965 (PYU99_18965) ptsN 4130629..4131075 (-) 447 WP_005331355.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PYU99_RS18970 (PYU99_18970) hpf 4131078..4131365 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  PYU99_RS18975 (PYU99_18975) rpoN/rpoN1 4131386..4132825 (-) 1440 WP_182787431.1 RNA polymerase factor sigma-54 Machinery gene
  PYU99_RS18980 (PYU99_18980) lptB 4132891..4133616 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  PYU99_RS18985 (PYU99_18985) lptA 4133629..4134147 (-) 519 WP_041204879.1 lipopolysaccharide transport periplasmic protein LptA -
  PYU99_RS18990 (PYU99_18990) lptC 4134134..4134694 (-) 561 WP_005331338.1 LPS export ABC transporter periplasmic protein LptC -
  PYU99_RS18995 (PYU99_18995) kdsC 4134691..4135245 (-) 555 WP_005331333.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  PYU99_RS19000 (PYU99_19000) - 4135245..4136240 (-) 996 WP_041204878.1 KpsF/GutQ family sugar-phosphate isomerase -
  PYU99_RS19005 (PYU99_19005) mlaF 4136447..4137247 (+) 801 WP_270824605.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence


Protein


Download         Length: 479 a.a.        Molecular weight: 53787.80 Da        Isoelectric Point: 4.4457

>NTDB_id=797211 PYU99_RS18975 WP_182787431.1 4131386..4132825(-) (rpoN/rpoN1) [Aeromonas media strain K521]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAHETSPIEPQDASQLDSCDAMAQDKMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGAKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=797211 PYU99_RS18975 WP_182787431.1 4131386..4132825(-) (rpoN/rpoN1) [Aeromonas media strain K521]
ATGAAGCCGACATTACAGTTGCGTCTCGGCCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGATAATAACCCCTTGCTGGAGCAGGAGGAGAATGAGG
CGCACGAAACCAGTCCGATAGAACCCCAGGACGCCAGTCAACTCGACTCCTGTGACGCAATGGCACAGGACAAGATGCCG
GATGAACTGCCGGTGGACACTACCTGGGATGAGGTCTATTCCGCCGGCACGGCTCAGAGCGCTGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAAACCACCGAAAATCTGCAGGATTATCTGTTGTGGCAGATGCGACTGACGCCGTTCA
GTGATCTGGATGCCGCGATTGCCCTCGCCATCATCGATGCCATCGATGAGTCTGGCTACCTGACCGTTTCTCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGTGAAGAGGTAGAAGTTGAACTGGATGAAGTGGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTTGGCATCGCCGCTCGCTCGGTACAGGAGTGTTTGTTGATCCAGCTTGGCCAGTATTCGCCGGATCTGCCCT
GGCTCAATGAGGCAAGGGAGGTGATCCGCGAGCACATGGACTTGCTCGGCAACCGTGACTACCGCACCTTGGCGCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTACTGGATCTCATCCAGCAGCTGGAGCCTAGACCCGGTAATGGCATCAT
CCAGAGCGAATCGCAATACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGGGCGAAGTGGGTGGTTGAACTCAACCCGG
ATTCGGCGCCGCGCATTCGTGTCAACGAGGCCTATGCGGCAATGGCACGCAATGCCCGCAGCAGCACGGATACTCAGTTC
ATTCGTTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGAAACGACACCCTGCTCAAGGTGGCAAG
CTGCATAGTCGAGCAGCAACAGGGTTTCTTCGAGTACGGTGAAGAGGCCATGAAGCCCATGGTACTCAACGACATCGCCG
AGGCGGTGGAGATGCACGAGTCGACGATTTCACGGGTGACGACCCAGAAGTACATGCATACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAACACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGTGCCCTTATCAA
GAAGCTGGTGACGGCCGAAAACCCGGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.063

100

0.489