Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RA292_RS04985 Genome accession   NZ_CP132912
Coordinates   983372..984115 (+) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 978372..989115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS04950 yhaI 978700..979041 (+) 342 WP_009966921.1 YhaI family protein -
  RA292_RS04955 scoC 979038..979649 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  RA292_RS04960 yhaH 979827..980183 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  RA292_RS04965 - 980313..980504 (+) 192 WP_003233238.1 hypothetical protein -
  RA292_RS04970 trpP 980578..981096 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  RA292_RS04975 serC 981221..982300 (-) 1080 WP_003233234.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  RA292_RS04980 hinT 982447..982884 (-) 438 WP_003233231.1 HIT family protein -
  RA292_RS04985 pptA 983372..984115 (+) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  RA292_RS04990 ecsB 984108..985334 (+) 1227 WP_003245169.1 ABC transporter permease EcsB -
  RA292_RS04995 ecsC 985354..986064 (+) 711 WP_003233225.1 EcsC family protein -
  RA292_RS05000 sndC 986082..987272 (-) 1191 WP_003245681.1 N-acetyl amino acid acetylase SndC -
  RA292_RS05005 - 987345..988736 (-) 1392 WP_003233218.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=797160 RA292_RS04985 WP_003233230.1 983372..984115(+) (pptA) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=797160 RA292_RS04985 WP_003233230.1 983372..984115(+) (pptA) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547