Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   RA292_RS01930 Genome accession   NZ_CP132912
Coordinates   399815..400249 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 394815..405249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS01900 ydaD 395465..396325 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  RA292_RS01905 lyxE 396341..396844 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  RA292_RS01910 ydaF 396930..397481 (+) 552 WP_003246691.1 GNAT family N-acetyltransferase -
  RA292_RS01915 ydaG 397559..397981 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  RA292_RS01920 amj 398487..399296 (+) 810 WP_003234394.1 lipid II flippase Amj -
  RA292_RS01925 ydzA 399340..399630 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  RA292_RS01930 lrpC 399815..400249 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  RA292_RS01935 topB 400314..402497 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  RA292_RS01940 ephJ 402700..403788 (+) 1089 WP_003246551.1 lipoprotein -
  RA292_RS01945 epsK 403769..404620 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=797144 RA292_RS01930 WP_003246585.1 399815..400249(+) (lrpC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=797144 RA292_RS01930 WP_003246585.1 399815..400249(+) (lrpC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1