Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   L6481_RS19980 Genome accession   NZ_AP022877
Coordinates   3897913..3898707 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus cereus strain MRY14-0060     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3892913..3903707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6481_RS19960 (BCM0060_3942) - 3894714..3894947 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  L6481_RS19965 (BCM0060_3943) - 3894996..3895724 (-) 729 WP_202283041.1 glycerophosphodiester phosphodiesterase -
  L6481_RS19970 (BCM0060_3944) - 3895775..3895921 (+) 147 WP_001247671.1 YycC family protein -
  L6481_RS19975 (BCM0060_3945) - 3896089..3897615 (-) 1527 WP_000218389.1 glycosyltransferase family 39 protein -
  L6481_RS19980 (BCM0060_3946) spo0A 3897913..3898707 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  L6481_RS19985 (BCM0060_3947) spoIVB 3898995..3900293 (-) 1299 WP_002003478.1 SpoIVB peptidase -
  L6481_RS19990 (BCM0060_3948) recN 3900412..3902151 (-) 1740 WP_000947754.1 DNA repair protein RecN Machinery gene
  L6481_RS19995 (BCM0060_3949) argR 3902419..3902868 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=79713 L6481_RS19980 WP_003161566.1 3897913..3898707(-) (spo0A) [Bacillus cereus strain MRY14-0060]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=79713 L6481_RS19980 WP_003161566.1 3897913..3898707(-) (spo0A) [Bacillus cereus strain MRY14-0060]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAAAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGACATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATTGCAATGGTTGCAGATAAGCTTAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment