Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYW40_RS12030 Genome accession   NZ_CP118979
Coordinates   2461010..2461522 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain DSM 20263     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2452947..2463194 2461010..2461522 within 0


Gene organization within MGE regions


Location: 2452947..2463194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW40_RS11980 - 2452947..2453465 (+) 519 WP_057504940.1 type 1 glutamine amidotransferase domain-containing protein -
  PYW40_RS11985 - 2453733..2453828 (-) 96 WP_115172249.1 type I toxin-antitoxin system Fst family toxin -
  PYW40_RS11990 - 2454570..2455028 (-) 459 WP_016931397.1 DUF1307 domain-containing protein -
  PYW40_RS11995 - 2455177..2455443 (-) 267 WP_053020042.1 hypothetical protein -
  PYW40_RS12000 - 2455628..2457297 (-) 1670 Protein_2324 IS1182 family transposase -
  PYW40_RS12005 - 2457580..2457828 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  PYW40_RS12010 - 2458006..2458755 (-) 750 Protein_2326 amidohydrolase family protein -
  PYW40_RS12015 - 2458971..2459228 (+) 258 WP_011276864.1 hypothetical protein -
  PYW40_RS12020 - 2459432..2460502 (+) 1071 WP_052151825.1 Ltp family lipoprotein -
  PYW40_RS12025 rpsR 2460720..2460962 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  PYW40_RS12030 ssbA 2461010..2461522 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  PYW40_RS12035 rpsF 2461544..2461840 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  PYW40_RS12040 - 2462131..2462937 (+) 807 WP_033079913.1 glycoside hydrolase family 25 protein -
  PYW40_RS12045 - 2463003..2463194 (+) 192 WP_011276869.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=797129 PYW40_RS12030 WP_011276866.1 2461010..2461522(-) (ssbA) [Staphylococcus haemolyticus strain DSM 20263]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=797129 PYW40_RS12030 WP_011276866.1 2461010..2461522(-) (ssbA) [Staphylococcus haemolyticus strain DSM 20263]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACATCTTACAATAACAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376