Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   RA292_RS00330 Genome accession   NZ_CP132912
Coordinates   59805..60035 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54805..65035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS00300 ridA 54970..55347 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  RA292_RS00305 spoVG 55541..55834 (+) 294 WP_003218346.1 septation regulator SpoVG -
  RA292_RS00310 glmU 56027..57397 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  RA292_RS00315 prsS 57420..58373 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  RA292_RS00320 rplYB 58458..59072 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  RA292_RS00325 pth 59179..59745 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  RA292_RS00330 subA/fin 59805..60035 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  RA292_RS00335 mfd 60105..63638 (+) 3534 WP_003226723.1 transcription-repair coupling factor -
  RA292_RS00340 spoVT 63774..64310 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=797129 RA292_RS00330 WP_003243417.1 59805..60035(+) (subA/fin) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=797129 RA292_RS00330 WP_003243417.1 59805..60035(+) (subA/fin) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1