Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RA106_RS05345 Genome accession   NZ_CP132900
Coordinates   1023730..1024212 (-) Length   160 a.a.
NCBI ID   WP_011681193.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CICC 20372     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018730..1029212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA106_RS05325 (RA106_05345) pepT 1019211..1020434 (-) 1224 WP_011681190.1 peptidase T -
  RA106_RS05330 (RA106_05350) lepB 1020642..1021199 (-) 558 WP_011681191.1 signal peptidase I -
  RA106_RS05335 (RA106_05355) - 1021322..1022551 (-) 1230 WP_011681192.1 lipopolysaccharide assembly protein LapB -
  RA106_RS05340 (RA106_05360) - 1022541..1023719 (-) 1179 WP_024704144.1 AI-2E family transporter -
  RA106_RS05345 (RA106_05365) mutX 1023730..1024212 (-) 483 WP_011681193.1 8-oxo-dGTP diphosphatase Machinery gene
  RA106_RS05350 (RA106_05370) ftsX 1024368..1025297 (-) 930 WP_011681194.1 permease-like cell division protein FtsX -
  RA106_RS05355 (RA106_05375) ftsE 1025290..1025982 (-) 693 WP_002953094.1 cell division ATP-binding protein FtsE -
  RA106_RS05365 (RA106_05385) queG 1027221..1028339 (-) 1119 WP_002953100.1 tRNA epoxyqueuosine(34) reductase QueG -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18885.35 Da        Isoelectric Point: 4.7200

>NTDB_id=797069 RA106_RS05345 WP_011681193.1 1023730..1024212(-) (mutX) [Streptococcus thermophilus strain CICC 20372]
MTKLATICYIDNGKELLLLHRNKKPNDVHEGKWISVGGKLESGETPDECARREIFEETHLTVKKMDFKGMITFPEFTPGH
DWYTYVFKVTDFEGKLISDEESREGTLEWVPYDQVLTKQTWEGDYEIFKWILEDKPFFSAKFSYDCNQNLIDKTVTFYDK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=797069 RA106_RS05345 WP_011681193.1 1023730..1024212(-) (mutX) [Streptococcus thermophilus strain CICC 20372]
ATGACAAAGTTAGCTACCATTTGTTATATTGACAATGGGAAGGAGCTTTTGCTCCTACATCGTAATAAAAAGCCTAATGA
TGTTCATGAAGGAAAGTGGATTTCTGTCGGGGGAAAACTAGAATCGGGAGAAACGCCTGACGAATGTGCTCGTCGTGAAA
TTTTCGAGGAAACTCATTTGACAGTGAAAAAGATGGACTTCAAAGGTATGATTACCTTCCCAGAATTTACTCCGGGCCAC
GATTGGTATACCTATGTCTTTAAGGTGACTGATTTTGAAGGAAAACTCATTTCTGATGAGGAATCTCGTGAAGGGACACT
TGAATGGGTACCATATGATCAGGTTTTAACTAAACAAACCTGGGAAGGTGACTATGAGATTTTTAAGTGGATTCTAGAAG
ATAAACCTTTCTTCTCTGCAAAATTTAGCTACGATTGTAACCAAAACTTGATAGATAAAACTGTAACATTTTATGATAAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

99.375

0.706