Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PYW31_RS04200 Genome accession   NZ_CP118976
Coordinates   901876..902592 (-) Length   238 a.a.
NCBI ID   WP_046838132.1    Uniprot ID   -
Organism   Staphylococcus succinus strain DSM 14617     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 896876..907592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW31_RS04180 - 897935..898162 (+) 228 WP_046838128.1 sulfurtransferase TusA family protein -
  PYW31_RS04185 - 898309..899271 (+) 963 WP_046838129.1 LacI family DNA-binding transcriptional regulator -
  PYW31_RS04190 - 899371..900855 (+) 1485 WP_046838130.1 sucrose-6-phosphate hydrolase -
  PYW31_RS04195 - 900852..901817 (+) 966 WP_046838131.1 carbohydrate kinase family protein -
  PYW31_RS04200 agrA 901876..902592 (-) 717 WP_046838132.1 quorum-sensing response regulator AgrA Regulator
  PYW31_RS04205 agrC 902605..903900 (-) 1296 WP_046838133.1 quorum-sensing sensor histidine kinase AgrC -
  PYW31_RS04210 agrD 903926..904063 (-) 138 WP_046838134.1 cyclic lactone autoinducer peptide AgrD -
  PYW31_RS04215 - 904060..904635 (-) 576 WP_046838135.1 accessory gene regulator AgrB -
  PYW31_RS04220 - 905614..906399 (-) 786 WP_046838136.1 carbon-nitrogen family hydrolase -
  PYW31_RS04225 - 906587..907216 (-) 630 WP_046838137.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27958.68 Da        Isoelectric Point: 5.0584

>NTDB_id=797069 PYW31_RS04200 WP_046838132.1 901876..902592(-) (agrA) [Staphylococcus succinus strain DSM 14617]
MKIFICEDDARQRENMISIINNYIMIEEKPMQIEVATDDPYEILERSKNTSDIGCYFLDIQLNSDINGIKLASEIRKYDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLNTSESRLQLLSKESNVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDDRFFRCHNSFVINRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=797069 PYW31_RS04200 WP_046838132.1 901876..902592(-) (agrA) [Staphylococcus succinus strain DSM 14617]
ATGAAAATATTCATATGTGAAGATGATGCAAGACAACGTGAAAACATGATATCAATCATCAACAACTACATCATGATTGA
AGAGAAACCCATGCAAATTGAAGTTGCAACTGATGATCCTTATGAAATACTAGAACGTTCAAAAAACACGAGCGACATTG
GATGTTACTTCTTAGATATTCAATTAAACTCTGATATTAATGGTATTAAACTCGCAAGTGAAATTCGTAAATATGATCCT
GTCGGTAATATTATTTTTGTTACAAGTCATAGTGAACTTACCTATCTTACTTTCGTGTATAAAGTTGCTGCTATGGACTT
CATCTTCAAAGATGACCCTGATGAATTAAAATCAAGAATTATTGATTGTCTTAATACCTCTGAATCTAGATTGCAACTAC
TTTCCAAAGAATCTAATGTGGAAACGATAGAATTAAAACGTGGCAGTAATTCAGTCTATGTTCAATATGATGATGTTATG
TTTTTCGAATCCTCTACTAAATCACATAGATTAATTGCTCATTTAGATAATCGTCAAATCGAATTTTACGGCAATCTTAA
AGAGCTGGATCAACTTGATGATAGATTCTTCCGATGTCATAATAGTTTTGTTATAAATCGACATAACATAGAGTCTATAG
ATTCTAAATCACGTATTGTTTACTTTAAAAACAACGAACATTGCTATGCTTCAGTGAGAAACGTCAAGAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.134

100

0.861