Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PYW35_RS10650 Genome accession   NZ_CP118974
Coordinates   2121461..2122432 (-) Length   323 a.a.
NCBI ID   WP_016911805.1    Uniprot ID   A0A2T4PVZ9
Organism   Mammaliicoccus vitulinus strain DSM 15615     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2119709..2152058 2121461..2122432 within 0


Gene organization within MGE regions


Location: 2119709..2152058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW35_RS10640 - 2119709..2120509 (-) 801 WP_016911803.1 ABC transporter ATP-binding protein -
  PYW35_RS10645 - 2120506..2121471 (-) 966 WP_204107849.1 iron chelate uptake ABC transporter family permease subunit -
  PYW35_RS10650 ceuB 2121461..2122432 (-) 972 WP_016911805.1 ABC transporter permease Machinery gene
  PYW35_RS10655 - 2122558..2122974 (-) 417 WP_103323460.1 FixH family protein -
  PYW35_RS10660 nrdF 2123196..2124167 (-) 972 WP_016911807.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  PYW35_RS10665 nrdE 2124195..2126300 (-) 2106 WP_016911808.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  PYW35_RS10670 nrdI 2126263..2126661 (-) 399 WP_016911809.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  PYW35_RS10675 - 2127039..2127923 (+) 885 WP_016911810.1 DMT family transporter -
  PYW35_RS10680 queF 2127923..2128423 (+) 501 WP_016911811.1 preQ(1) synthase -
  PYW35_RS10685 - 2128722..2130236 (+) 1515 WP_103323512.1 peptide MFS transporter -
  PYW35_RS10690 - 2131085..2132587 (+) 1503 WP_103323513.1 peptide MFS transporter -
  PYW35_RS10695 - 2132641..2133222 (-) 582 WP_103323514.1 5' nucleotidase, NT5C type -
  PYW35_RS10700 hisC 2133289..2134356 (-) 1068 WP_103323515.1 histidinol-phosphate transaminase -
  PYW35_RS10705 - 2134462..2135976 (-) 1515 WP_103323516.1 ABC transporter permease/substrate-binding protein -
  PYW35_RS10710 - 2135976..2136935 (-) 960 WP_103323517.1 ABC transporter ATP-binding protein -
  PYW35_RS10715 recQ 2137026..2138804 (-) 1779 WP_016911775.1 DNA helicase RecQ -
  PYW35_RS10720 - 2138827..2140698 (-) 1872 WP_103323518.1 ABC-F family ATP-binding cassette domain-containing protein -
  PYW35_RS10725 - 2140784..2141599 (+) 816 WP_103323519.1 ZIP family metal transporter -
  PYW35_RS10730 - 2141600..2143288 (-) 1689 WP_204107850.1 IS1182 family transposase -
  PYW35_RS10735 ltaS 2143574..2145514 (-) 1941 WP_103322609.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  PYW35_RS10740 - 2145715..2146719 (-) 1005 WP_016911779.1 biotin-dependent carboxyltransferase family protein -
  PYW35_RS10745 - 2146710..2147411 (-) 702 WP_103322610.1 carboxyltransferase domain-containing protein -
  PYW35_RS10750 - 2147447..2147662 (-) 216 WP_016911781.1 hypothetical protein -
  PYW35_RS10755 pabB 2147724..2149472 (-) 1749 WP_103322611.1 aminodeoxychorismate synthase component I -
  PYW35_RS10760 - 2149450..2150052 (-) 603 WP_016911783.1 anthranilate synthase component II -
  PYW35_RS10765 queC 2150256..2150924 (+) 669 WP_016911784.1 7-cyano-7-deazaguanine synthase QueC -
  PYW35_RS10770 queD 2150924..2151355 (+) 432 WP_103322612.1 6-carboxytetrahydropterin synthase QueD -
  PYW35_RS10775 queE 2151348..2152058 (+) 711 WP_103322613.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35442.90 Da        Isoelectric Point: 10.5946

>NTDB_id=797055 PYW35_RS10650 WP_016911805.1 2121461..2122432(-) (ceuB) [Mammaliicoccus vitulinus strain DSM 15615]
MGKFLMRLDVLAILLVIATFFSIFIGVSEVKPLHIFNLSDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILVKLLFATLLSLLGTMLFMQILQRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLISMFRGDHLKNALPHTAIFGALFVMICDVLGRLIIFPYEITIGLTIGVIGSFIFIVMLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=797055 PYW35_RS10650 WP_016911805.1 2121461..2122432(-) (ceuB) [Mammaliicoccus vitulinus strain DSM 15615]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAGCTATATTATTAGTAATCGCAACATTCTTCTCGATTTTTATAGGTGT
CTCTGAGGTAAAACCTTTACATATATTTAATCTATCTGATGAACAAAAAAATATATTAGTATCGAGTAGGATTCCAAGAA
CAGTAAGTATTATTATTTCGGGTAGCTCTTTAGCAATTTGTGGGCTTATTATGCAACAGCTCACGCGTAATAAATTTGTT
TCGCCAACAACGGCTGGAACAATGGACTGGGCTAGATTAGGTATTTTAATTTCTTTAATTGCTTTTCCAGAGGCAAATAT
ATTAGTTAAATTACTATTTGCTACATTGTTGAGTTTGTTAGGAACAATGTTATTCATGCAAATTCTACAAAGAATTCAAT
TCAAAGATGTCATATTCATTCCACTAGTTGGTATTATGCTCGGAAATATCGTTTCTAGTTTTTCATCTTTTGTTGCTTTA
AGAACGAATGCTGTGCAAAGTATAGGGAATTTCATGCAAGGTAATTTTTCGATTATTACAAGCGGTAGATATGAAATTTT
ATATATAAGTATTCCGTTATTGATTCTTGCATTTATATTTGCAAATCAATTTACGATTGCTGGAATGGGTAAAGATTTTA
GTGTGAACTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGGCTGATTATCGCATCAATTATTACCGCGCTCGTTGTT
GTAACAGTTGGGATGATGCCTTTCTTAGGATTGATTATTCCAAACTTAATATCAATGTTTAGAGGTGATCATTTAAAAAA
TGCACTTCCACATACAGCTATTTTCGGCGCATTGTTTGTTATGATTTGTGATGTATTAGGTAGACTCATCATTTTCCCTT
ATGAAATTACAATTGGATTAACGATTGGTGTAATTGGTAGTTTTATTTTTATAGTAATGCTGATGAAAGGACGATCAAGA
AATGCTCAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4PVZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.527

98.142

0.486