Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RA171_RS22210 Genome accession   NZ_CP132728
Coordinates   4598525..4599154 (+) Length   209 a.a.
NCBI ID   WP_032296620.1    Uniprot ID   -
Organism   Escherichia coli strain LZSFT34     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4593525..4604154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA171_RS22190 (RA171_22140) ycbZ 4593926..4595686 (-) 1761 WP_000156526.1 Lon protease family protein -
  RA171_RS22195 (RA171_22145) matP 4595872..4596324 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RA171_RS22200 (RA171_22150) ompA 4596400..4597440 (-) 1041 WP_000750416.1 porin OmpA -
  RA171_RS22205 (RA171_22155) sulA 4597797..4598306 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RA171_RS22210 (RA171_22160) sxy/tfoX 4598525..4599154 (+) 630 WP_032296620.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RA171_RS22215 (RA171_22165) yccS 4599117..4601279 (-) 2163 WP_072170306.1 YccS family putative transporter -
  RA171_RS22220 (RA171_22170) yccF 4601289..4601735 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RA171_RS22225 (RA171_22175) helD 4601858..4603912 (+) 2055 WP_196612856.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24127.97 Da        Isoelectric Point: 8.9891

>NTDB_id=797020 RA171_RS22210 WP_032296620.1 4598525..4599154(+) (sxy/tfoX) [Escherichia coli strain LZSFT34]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVAHRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=797020 RA171_RS22210 WP_032296620.1 4598525..4599154(+) (sxy/tfoX) [Escherichia coli strain LZSFT34]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACA
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995