Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   RA171_RS03900 Genome accession   NZ_CP132728
Coordinates   775838..776494 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain LZSFT34     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 770838..781494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA171_RS03870 (RA171_03865) yecA 772090..772755 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  RA171_RS03890 (RA171_03885) pgsA 773404..773952 (-) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RA171_RS03895 (RA171_03890) uvrC 774009..775841 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  RA171_RS03900 (RA171_03895) letA 775838..776494 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  RA171_RS03905 - 776636..776707 (+) 72 Protein_775 transcriptional regulator -
  RA171_RS03910 (RA171_03900) yecU 776790..776966 (+) 177 WP_000590347.1 protein YecU -
  RA171_RS03915 (RA171_03905) yecF 776953..777177 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  RA171_RS03920 (RA171_03910) sdiA 777244..777966 (-) 723 WP_001154279.1 transcriptional regulator SdiA -
  RA171_RS03925 (RA171_03915) tcyN 778196..778948 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  RA171_RS03930 (RA171_03920) tcyL 778945..779613 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  RA171_RS03935 (RA171_03925) dcyD 779628..780614 (-) 987 WP_196612824.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=796951 RA171_RS03900 WP_000611335.1 775838..776494(-) (letA) [Escherichia coli strain LZSFT34]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=796951 RA171_RS03900 WP_000611335.1 775838..776494(-) (letA) [Escherichia coli strain LZSFT34]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486