Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   PYW33_RS14095 Genome accession   NZ_CP118963
Coordinates   2932554..2932880 (-) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2927554..2937880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS14075 - 2927749..2928408 (-) 660 WP_004278623.1 FHA domain-containing protein -
  PYW33_RS14080 gspD 2928471..2930735 (-) 2265 WP_004647312.1 type II secretion system secretin GspD -
  PYW33_RS14085 - 2930774..2931628 (-) 855 WP_004647311.1 type II secretion system protein N -
  PYW33_RS14090 gspN 2931628..2932371 (-) 744 WP_004647310.1 type II secretion system protein N -
  PYW33_RS14095 hns 2932554..2932880 (-) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  PYW33_RS14100 - 2933022..2933450 (-) 429 WP_004278628.1 acyl-CoA thioesterase -
  PYW33_RS14105 - 2933459..2934652 (-) 1194 WP_004278629.1 hypothetical protein -
  PYW33_RS14110 - 2934659..2935498 (-) 840 WP_004647307.1 hypothetical protein -
  PYW33_RS14115 - 2935495..2936274 (-) 780 WP_004278631.1 uroporphyrinogen-III synthase -
  PYW33_RS14120 hemC 2936274..2937197 (-) 924 WP_004647306.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=796934 PYW33_RS14095 WP_026055760.1 2932554..2932880(-) (hns) [Acinetobacter lwoffii strain DSM 2403]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=796934 PYW33_RS14095 WP_026055760.1 2932554..2932880(-) (hns) [Acinetobacter lwoffii strain DSM 2403]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAGTCACTGATTGCTTCAAA
AAAAGATCAAGAGATTGAAGATGCTTATCAGCAAATTTTGGCAGTTGCTGAGAAAGTTGGTATGACAGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAACGTAAGAAATCGTCACGTAAGTCGGTTGAACCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCGCGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787