Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   PYW33_RS13805 Genome accession   NZ_CP118963
Coordinates   2861829..2864051 (+) Length   740 a.a.
NCBI ID   WP_004647346.1    Uniprot ID   N8Q172
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2856829..2869051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS13785 lnt 2857626..2859185 (+) 1560 WP_004278565.1 apolipoprotein N-acyltransferase -
  PYW33_RS13790 - 2859339..2859674 (-) 336 WP_004278566.1 hypothetical protein -
  PYW33_RS13795 gspG 2859959..2860393 (-) 435 WP_004278567.1 type II secretion system major pseudopilin GspG -
  PYW33_RS13800 gspF 2860473..2861678 (-) 1206 WP_004278568.1 type II secretion system inner membrane protein GspF -
  PYW33_RS13805 priA 2861829..2864051 (+) 2223 WP_004647346.1 primosomal protein N' Machinery gene
  PYW33_RS13810 - 2864127..2865980 (+) 1854 WP_004647345.1 cation:proton antiporter -
  PYW33_RS13815 - 2866031..2866906 (+) 876 WP_004647344.1 Hsp33 family molecular chaperone HslO -
  PYW33_RS13820 - 2867228..2867689 (+) 462 WP_004647343.1 DUF2147 domain-containing protein -
  PYW33_RS13825 - 2868174..2868503 (+) 330 WP_004647342.1 chaperone modulator CbpM -
  PYW33_RS13830 - 2868593..2868850 (+) 258 WP_004278574.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84278.30 Da        Isoelectric Point: 8.5527

>NTDB_id=796933 PYW33_RS13805 WP_004647346.1 2861829..2864051(+) (priA) [Acinetobacter lwoffii strain DSM 2403]
MQNSHTDSSLLYRVRVAVPVHVFDCFDYTMSAEQFEQAQIGARVLVSFGRQNLVGVIIEKLPADTPLDPRFKLKAVTELL
DERAIIDAKVLSLLTWSAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKFLDPDAEAKVRRSDKQQEAYRILKLHPVG
TTENVLNMAGIETATLKALEKKEICACVLEPQDFNPQPMQLAQMPLTANPEQKHAVEQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVILGSATPSIDSYALVQHGKMQALELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELITLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQMARM
PPYRYAILIRCESKDQSQNTEFLQKHAALLRQYPDLELDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=796933 PYW33_RS13805 WP_004647346.1 2861829..2864051(+) (priA) [Acinetobacter lwoffii strain DSM 2403]
ATGCAAAATTCTCACACCGATTCCAGTCTACTTTATCGCGTACGCGTTGCTGTACCTGTACATGTATTTGATTGTTTTGA
TTACACAATGAGTGCAGAACAATTTGAACAGGCGCAGATTGGCGCACGTGTACTGGTATCGTTTGGTCGGCAGAATCTGG
TCGGGGTGATTATCGAAAAACTGCCTGCAGACACTCCTCTCGACCCACGCTTTAAGCTTAAGGCAGTAACCGAACTGCTC
GATGAACGCGCCATTATAGATGCCAAAGTTTTAAGTTTGTTGACATGGTCAGCGCAGTATTACCAGTTTCCGATCGGTGA
AGTCGTCCACAGTGCCCTGCCGACTCTGTTGCGTCAGGGTAAGCCTTATAACCTGCTGGCCCGTACCTGGAAATTCCTGG
ACCCTGATGCCGAGGCCAAAGTACGCCGTTCGGACAAGCAGCAGGAAGCTTACCGGATTTTAAAACTGCATCCGGTCGGG
ACCACTGAAAATGTGCTGAACATGGCCGGGATTGAAACCGCGACCTTAAAAGCGCTGGAGAAAAAAGAGATTTGCGCCTG
TGTGCTGGAGCCACAAGATTTCAATCCGCAGCCGATGCAGCTGGCACAAATGCCGCTTACTGCCAATCCTGAACAAAAAC
ATGCAGTCGAACAGGTATTAAAATATCGCAATCAATATCAAGCTTTTTTACTGGATGGTCTGACCGGCAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTGAAACAGGGCAAACAGGTGCTGGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGTTGCTGCATTCCGGGCTGAATGATTCCAAAC
GGCTACAAGCCTGGCAGTCGGCAGAAACCGGCAAAGCCTCAATCGTACTCGGTACACGTTCTGCCATTTATACCCCGATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCCCG
CGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCCGGTAATCTTAGGGTCAGCCACACCAAGCATTGACAGTTATG
CGCTGGTGCAACATGGCAAGATGCAGGCACTGGAGCTGAACCAGCGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGGATTAGCCTGCAATTGATTCAGGACATCAAAAAGCGCCTGGAGAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGCCGTGGCTATGCCCCCGTCCTGCTGTGTGGCAGCTGTGGCTGGCAGGCGAAAT
GTCCGCACTGTGATGCCAACTTCACTGTACACCGCCAGCCTTATCAGCATCTACATTGCCATCACTGCGGTACTATTCAC
CGTATGCCGGAACACTGCCCACAATGTCAGCATCAGGAACTGATTACACTGGGTATGGGCACCGGCAAAGTCGAAGAGCA
TCTGAATGAGCTCTTTCCGGATTTTGAGGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTCGGCAGCTGGCAAAAAA
TCTATGACAAGATTCAGAAAAGCGAACCTGCCATTTTGCTTGGCACCCAGATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTGACGCTGGTGGCGATTCTGGATATCGATTCCGGTCTGCTCAGTGTGGATTTCCGTGCTACTGAACGGACTGCACAACT
GATTGTGCAGGTGGCAGGCCGCGCAGGCCGTGGTGAACATAAGGGTGATGTTTACCTACAGACCCTCAGACCTGATCATG
CCCTGCTGAATACCCTGGTCAATGAAAATTATCGCGTATTTGCCCAGCAAACCTTAAAAGAACGGCAGATGGCCAGAATG
CCGCCCTATCGTTATGCCATCCTGATTCGCTGTGAATCCAAGGATCAGTCACAAAATACCGAATTCTTACAGAAACATGC
AGCACTCCTCAGGCAATATCCTGATCTGGAGCTGGACATCTGGGGACCGATTCCTGCGCCAATGGAACGCAAGGCGGGGC
GCTATCAGTCGCATATGGTGCTATTGTCAGCGGATCGTCCACGTTTGCATTACTATGTGCGTAGCTGGTGGCAAAACATG
CTGCAGGACAAACCTTCTAGCATGAAGCTCACGCTGGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8Q172

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.117

99.189

0.705