Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   PYW33_RS03570 Genome accession   NZ_CP118963
Coordinates   774723..779174 (+) Length   1483 a.a.
NCBI ID   WP_004645840.1    Uniprot ID   N8Q6I8
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 769723..784174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS03545 - 770183..770830 (-) 648 WP_004645843.1 hypothetical protein -
  PYW33_RS03550 pilG 771117..771500 (+) 384 WP_004280711.1 twitching motility response regulator PilG Regulator
  PYW33_RS03555 - 771526..771894 (+) 369 WP_004280710.1 response regulator -
  PYW33_RS03560 - 771900..772436 (+) 537 WP_004280709.1 chemotaxis protein CheW -
  PYW33_RS03565 - 772483..774555 (+) 2073 WP_004645841.1 methyl-accepting chemotaxis protein -
  PYW33_RS03570 chpA 774723..779174 (+) 4452 WP_004645840.1 Hpt domain-containing protein Regulator
  PYW33_RS03575 - 779178..779636 (+) 459 WP_004645839.1 hypothetical protein -
  PYW33_RS03580 dapE 779701..780837 (-) 1137 WP_004645838.1 succinyl-diaminopimelate desuccinylase -
  PYW33_RS03585 - 780959..781111 (-) 153 WP_004280704.1 entericidin A/B family lipoprotein -
  PYW33_RS03590 - 781224..782099 (-) 876 WP_004645836.1 DUF1853 family protein -
  PYW33_RS03595 - 782187..782540 (+) 354 Protein_681 YbaN family protein -
  PYW33_RS03600 elsL 782666..783199 (+) 534 WP_004645834.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1483 a.a.        Molecular weight: 165669.55 Da        Isoelectric Point: 4.3158

>NTDB_id=796917 PYW33_RS03570 WP_004645840.1 774723..779174(+) (chpA) [Acinetobacter lwoffii strain DSM 2403]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLTNPDHQENLKTIRRHFHTLKGSGRMVGAKSA
GEMAWAVEDTLNRVLSGSIQLTPTVQKFAQAVLNVYQYALYPKFKHVQQLDLDLRPMVLLGQQLQQQISPEPALEELLAL
AVHLTAEGQMTGLELADNEPSEAELTVAPVEVPVRSDIEETVAIFIEEAEEHLETIATFLRTEDEKSQDYNALIRAIHTL
RGSSSMAQIDQIFEASSKVEHLFKTLLQDEIVSTSKETALLIQYAEFVSDYLHLLRQGNTAKLDAVYATFERVWNDYGFA
VTETNSIQTQGLVSKLVELDIDLLLDAEFEFDKRAQVDYPEYIQALSQQAAELLAHTESRAAQGIHEFTADLKSAYDALL
EKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDEIQKILSELSAFVQQDLEIFAEDNTNQNVELSSEATQVAET
VATGSVDFAGLSQRIAADRQQQQSAETNRDFDEELLSIFLEEADELLAGIDEDLNTWSKKQDDTTSLNNLMRHLHTLKGG
ANMIAASHIGLIAHELESIYERVIRQQIAVTPALIQIIRLVQDNVSDRIQSIREDGIDYPAPEAIAILQNIQALVSGQAV
AAVESANTVAKVVEVEATSIPEPQLEESATTEQPATDLAEAEELLEISESSEAIEDTPVERSEEDELKSIVEESFLEESE
EILANAEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMIDVEEVASIAYELETTFEQFAVYQFNSNAYDGLLQKTLVWL
RQAIFQRDYSGFEPLHSSLKKIAYVDVTAQLPERLAKTDNLVVSTDFGFVEGDGTEPPQMMGEWANSGTSDSNNEMIRIS
ADLVEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADFDPLEMDQYS
SLNQLSKSLAESASDLVDFKSTLADKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRMLPRLQRIVRQTSTTLNRPAEL
IVQNTEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSIVLNISRQGTDVIVSFSDDGKGIDAEKIREK
ALSLDLIKADQAIDQEEILQFIFHPGFSTAKAVTQISGRGVGLDVVQSEIKSLGGHVSVSSELGKGTVFTIRVPTTVAVS
DALMVKVGDQQYAISLAQIDRIVRIAPTTLESYFNSKDDYFKIDGENYKLRYLSEFVGNQPIPRLNNVGHSLPVLLIKGN
SGQTIALLVDQLVGSRAQIVVKPIGQQFANVGVVAGATILGDGQVCLILDGQNVARQIQATQRVKQLNDQRDGSRNSNAR
RLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDGFEVTNLVRHHDIHRDLPIIMI
TSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQG

Nucleotide


Download         Length: 4452 bp        

>NTDB_id=796917 PYW33_RS03570 WP_004645840.1 774723..779174(+) (chpA) [Acinetobacter lwoffii strain DSM 2403]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGATAGTTATCTTGACCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAGGAAATCGAAGAGATCTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGACTAATCCAGATC
ATCAAGAAAATCTGAAGACCATTCGCCGCCATTTTCACACCCTGAAAGGTTCAGGCCGCATGGTCGGGGCAAAATCGGCA
GGGGAAATGGCCTGGGCGGTTGAAGATACCTTAAACCGGGTTTTGTCCGGTTCGATTCAGCTAACACCGACGGTGCAAAA
ATTTGCCCAAGCGGTACTGAATGTCTATCAATATGCTTTATATCCAAAATTCAAACATGTACAGCAATTGGATCTCGACC
TGCGTCCAATGGTGCTGTTGGGACAACAATTACAACAACAAATTTCGCCTGAGCCTGCATTGGAAGAATTACTGGCATTG
GCAGTTCATTTGACTGCTGAAGGTCAGATGACAGGTCTTGAGCTTGCAGACAATGAGCCAAGTGAAGCTGAGCTAACAGT
AGCGCCAGTAGAAGTACCGGTTCGCAGTGATATCGAAGAAACTGTGGCGATCTTTATTGAAGAAGCAGAAGAGCATCTGG
AAACGATTGCCACCTTCCTTCGCACTGAAGATGAAAAATCACAAGATTATAATGCGCTAATTCGTGCGATTCATACCTTG
CGCGGCAGTTCATCCATGGCGCAGATTGACCAGATTTTTGAGGCCAGCTCTAAAGTAGAGCATCTGTTCAAAACCCTGCT
GCAAGATGAAATTGTCTCAACCTCAAAAGAAACTGCTTTACTGATTCAGTATGCCGAGTTTGTCAGTGACTATCTGCATT
TGCTACGTCAGGGCAACACTGCAAAACTGGATGCGGTATATGCCACCTTTGAGCGTGTCTGGAATGATTATGGCTTTGCA
GTTACTGAAACCAATAGTATTCAGACGCAAGGCTTGGTGTCCAAACTGGTTGAGCTGGATATTGATCTGTTATTGGATGC
CGAGTTTGAATTTGATAAACGCGCCCAAGTCGATTATCCGGAATATATTCAGGCACTCAGCCAGCAGGCTGCGGAATTGC
TGGCACATACAGAAAGCCGGGCAGCGCAGGGAATTCATGAATTCACTGCCGATCTGAAATCGGCTTATGATGCGCTGCTT
GAAAAGCCAGTGCTGCTAAACAGCGATTATGCTTATGAACTGTTCGCACAGGCGCATCAGGAATTTATTCATTTATTTGA
TACCTTGGCCGCAGGACAGCGCGTCATTCTGAATGATGAAATTCAAAAAATACTCAGTGAACTGTCTGCATTTGTGCAGC
AGGATCTGGAAATATTTGCTGAAGATAATACCAATCAGAATGTTGAGCTAAGCTCAGAGGCCACACAGGTGGCTGAAACT
GTCGCGACTGGCAGTGTCGATTTTGCTGGCTTGAGCCAACGCATCGCTGCGGATCGTCAGCAGCAGCAAAGTGCTGAAAC
CAACCGTGATTTTGATGAAGAATTACTAAGTATCTTCCTGGAAGAAGCGGATGAATTGCTGGCAGGCATTGATGAAGATC
TAAATACCTGGAGCAAAAAACAGGATGATACGACCTCACTGAACAATCTGATGCGTCATTTGCATACCTTAAAAGGTGGT
GCAAACATGATCGCAGCATCGCATATCGGTTTGATTGCGCATGAACTAGAAAGTATTTATGAGCGGGTGATCCGTCAGCA
AATTGCCGTGACACCTGCTTTAATCCAGATTATCCGTCTGGTACAGGACAACGTTTCCGATCGTATTCAATCTATTCGGG
AAGACGGTATTGATTATCCTGCACCAGAAGCGATTGCGATTCTGCAAAATATTCAGGCGCTGGTTTCTGGACAAGCTGTT
GCTGCTGTGGAGAGCGCGAACACTGTAGCTAAAGTTGTAGAGGTCGAAGCGACATCAATTCCTGAACCGCAACTTGAAGA
GTCAGCAACGACTGAACAGCCTGCAACTGATCTGGCTGAAGCTGAAGAATTACTGGAAATCTCTGAGTCTTCTGAGGCTA
TTGAAGACACACCAGTAGAACGTTCTGAAGAAGACGAACTGAAATCCATTGTTGAAGAGTCTTTCCTGGAAGAATCCGAA
GAGATTCTGGCGAATGCCGAGAAGCTCCTCAATCAATGGTTTGATCAGCGTAGTGACCGTAGTTTATTGCTGCAATTACA
GCGTGCCGCCCATAGTATCAAGGGTGGCGCACGTATGATTGATGTTGAAGAAGTGGCCAGTATTGCCTATGAGCTGGAAA
CGACTTTCGAACAGTTTGCGGTCTATCAATTTAACTCGAATGCCTATGATGGCTTATTGCAGAAAACGCTGGTCTGGTTA
AGACAGGCGATTTTCCAGCGCGACTATAGCGGCTTTGAGCCGCTGCACAGCAGTCTGAAAAAGATTGCTTATGTGGACGT
TACTGCGCAATTGCCTGAGCGTCTGGCGAAAACAGATAATCTTGTAGTCAGCACAGACTTCGGCTTTGTTGAAGGTGATG
GTACTGAACCGCCACAGATGATGGGTGAATGGGCGAATAGCGGTACCAGCGATAGTAATAACGAGATGATCCGTATCTCT
GCTGATCTGGTCGAGAAGATGATTGACCTGTCCGGTGAGAACTCGATTAACCGTTCGCGTATCGAGATGGACCTGGGTCA
GCTAGGCAATACCTTGAACGAGATGGAATTGGCGATCAAACGTCTTGCTGATCAGTTACGTCGAATGGAAGGCGAGCTGG
AATCACAGATTATTGCCAAACACGGTTCAGAGAACTCGCGCTATGCTGACTTTGACCCGCTGGAAATGGACCAGTATTCG
TCGCTCAACCAGCTGTCTAAATCACTGGCAGAATCTGCATCAGATTTGGTCGACTTCAAGAGTACACTGGCCGACAAGAT
TCGCGAAACTGAAGGTCTGTTATTGCAACAATCCCGTATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGG
TTCCATTTGATCGGATGTTGCCGCGTTTACAGCGTATCGTGCGTCAAACCTCGACCACCTTGAACCGTCCTGCAGAACTG
ATCGTACAGAATACCGAAGGTGAACTGGATCGTAACATTCTCGAGCGTCTGGTCACCCCATTTGAGCATATGCTGCGTAA
CGCGATTGACCATGGTCTGGAAGATACTGCAGATCGTATCGCACTGAACAAGCCGGAAGTCGGTTCTATTGTCTTGAACA
TCAGCCGTCAGGGAACCGATGTAATCGTGTCCTTTAGTGATGATGGTAAGGGGATTGATGCAGAGAAGATTCGTGAAAAA
GCCCTGAGTCTGGATCTGATCAAAGCGGATCAAGCCATCGATCAGGAAGAAATCCTGCAATTTATCTTCCATCCTGGTTT
CAGTACCGCGAAAGCAGTGACCCAGATTTCTGGTCGTGGTGTCGGTCTGGACGTGGTACAAAGCGAGATCAAATCACTGG
GCGGTCATGTGTCAGTGAGCTCGGAACTGGGCAAGGGCACGGTCTTTACGATCCGCGTTCCGACCACCGTAGCGGTCAGC
GATGCCTTGATGGTGAAAGTGGGCGATCAGCAATATGCGATTTCACTGGCGCAGATTGACCGAATTGTACGTATTGCGCC
GACTACATTGGAAAGTTATTTCAACAGTAAAGATGACTATTTCAAGATCGATGGCGAAAATTACAAATTGCGCTATCTGT
CTGAGTTTGTGGGCAACCAGCCGATTCCACGTCTGAATAATGTTGGGCATTCATTGCCGGTGCTGTTGATCAAAGGAAAT
AGTGGTCAGACCATTGCCTTACTGGTCGATCAGCTGGTCGGTTCACGAGCGCAGATTGTAGTAAAACCGATTGGACAGCA
GTTTGCCAACGTCGGGGTGGTGGCCGGTGCCACGATTCTGGGTGATGGTCAGGTCTGTCTGATTCTCGATGGACAGAATG
TTGCCCGCCAGATTCAGGCGACACAGCGTGTCAAACAGCTGAATGATCAGCGTGATGGTTCGCGTAATTCCAATGCACGT
CGTCTGGTAATGATTGTCGATGACTCGGTAACTGTACGTAAAGTGACGTCGCGTCTGCTTGAACGTCAAGGCTATGATAT
TGTGACTGCCAAAGATGGTGTGGATGCGATCGAGCAGCTTGAAAACGTCAGACCGGATCTGATGTTGCTGGATATCGAAA
TGCCGCGCATGGACGGTTTCGAAGTGACCAATCTGGTTCGTCACCATGATATTCACCGTGACTTGCCGATTATCATGATT
ACCTCACGTACCGGTGAGAAGCATCGTGAACGTGCATTCAGCTTGGGCGTAACGCACTATATGGGTAAACCGTTCCAGGA
AGCGGAGCTGCTGGCCAATATCCAGCAACTGATTGCTGAAAAACAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.447

100

0.624