Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   PYW33_RS02365 Genome accession   NZ_CP118963
Coordinates   516423..517280 (+) Length   285 a.a.
NCBI ID   WP_004645097.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511423..522280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS02340 - 511657..512862 (+) 1206 WP_004645091.1 CsgG/HfaB family protein -
  PYW33_RS02345 - 512947..513621 (+) 675 WP_004645092.1 hypothetical protein -
  PYW33_RS02350 - 513934..514509 (-) 576 WP_004645093.1 xanthine phosphoribosyltransferase -
  PYW33_RS02355 - 514598..515311 (-) 714 WP_004645094.1 DUF3108 domain-containing protein -
  PYW33_RS02360 - 515471..516157 (-) 687 WP_004645096.1 hypothetical protein -
  PYW33_RS02365 tonB2 516423..517280 (+) 858 WP_004645097.1 energy transducer TonB Machinery gene
  PYW33_RS02370 ybeY 517449..517931 (-) 483 WP_004645098.1 rRNA maturation RNase YbeY -
  PYW33_RS02375 - 517951..519027 (-) 1077 WP_004645099.1 PhoH family protein -
  PYW33_RS02380 miaB 519066..520523 (-) 1458 WP_004645100.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32696.05 Da        Isoelectric Point: 6.1614

>NTDB_id=796915 PYW33_RS02365 WP_004645097.1 516423..517280(+) (tonB2) [Acinetobacter lwoffii strain DSM 2403]
MPLVRTWWKDPVFSSAMLAAGILHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDEDIEHADFLAQTNQQGSGQFREAHRMS
SDMPSPLMEQQAGEEQKESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=796915 PYW33_RS02365 WP_004645097.1 516423..517280(+) (tonB2) [Acinetobacter lwoffii strain DSM 2403]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGATGCTTGCCGCAGGCATTCTGCATTTGATCGT
GCTGACCCTGGAATTTGGTATGCCGCAAGATCGGGATACCAGCACCAAAGAAATCGCCGTCAGTTTGCGACAGACGGATG
AAGATATTGAACATGCTGATTTTCTGGCTCAAACCAACCAGCAGGGTTCCGGTCAGTTTCGAGAAGCGCATCGCATGTCC
AGTGATATGCCATCGCCGTTAATGGAGCAGCAGGCGGGGGAAGAGCAAAAAGAAAGCCCGGATATGCTGCAACAGCAACG
GGAGCTGAGTTTCGAAGAAAAAGTGCTGATGACTACCTTGAGCTGGCAAAAGCAGGCAGAAGAAAATCAGCGTAAAAAAA
TGCAGGAACAGCTGCAAAGCCAGTTTCAGGCCAAAGCTGCGATGGTGGCGAGTCTGGAAGCACAATATTTACAGCGCCAG
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACAGTCGATGGCATCCAGGCCAAGCAGGATGTCTCGGCTGCCTATTTGGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGTAACCGCTATTATCCGGAAGCCGCCAAACAGCAGAATCTGGCAGGGGAAG
TGCGTCTGATGGTGATCCTGAACCAGAATGGCGGAATTCGAGCGATTCGATTAATTGACAGTTCAGGACATGCCATGCTG
GATGAGGCCGCGAAATCTTCCGTGCGTAAGGCGGCGCCATTTGGTGCTTTCGATAGCAAAATGAAGGAAATTTCCGAACT
ACGAGTTATTCGTACCTGGCGTTTTGATCCGGCCGAAGCTGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716