Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QU709_RS44830 Genome accession   NZ_CP132593
Coordinates   10045714..10046739 (-) Length   341 a.a.
NCBI ID   WP_306504190.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 10040714..10051739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS44815 (QU709_44825) - 10041762..10042169 (+) 408 WP_306504187.1 VOC family protein -
  QU709_RS44820 (QU709_44830) - 10042280..10044673 (+) 2394 WP_306504188.1 excinuclease ABC subunit UvrA -
  QU709_RS44825 (QU709_44835) - 10044893..10045492 (-) 600 WP_306504189.1 hypothetical protein -
  QU709_RS44830 (QU709_44840) amiE 10045714..10046739 (-) 1026 WP_306504190.1 ABC transporter ATP-binding protein Regulator
  QU709_RS44835 (QU709_44845) - 10046732..10048831 (-) 2100 WP_306504191.1 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein -
  QU709_RS44840 (QU709_44850) - 10048846..10049772 (-) 927 WP_306504192.1 ABC transporter permease -
  QU709_RS44845 (QU709_44855) - 10049788..10051341 (-) 1554 WP_306504193.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36829.40 Da        Isoelectric Point: 7.3096

>NTDB_id=796862 QU709_RS44830 WP_306504190.1 10045714..10046739(-) (amiE) [Streptomyces sp. YU58 strain SX92]
MPEPAPLLEATGLTKSFAVPRTAKGSTRLRAVDGVDLRLGRGETLGLVGESGCGKSTLARMLLMLERPDEGTVRFDGVDP
FTLSGARLLAWRRKVQMVFQDPFGSLNPRMCAADLIGEPWLTHRDLVPARQRAARVGELLEMVGLRTSDARRYPQEFSGG
QRQRIGIARALALEPEVVVCDEPVSALDLSVQAQVLNLLGDLRDELGLSYVFISHDLSVVRHVADRVAVMYLGRIVESGP
AEEVFERPYHPYTAALLSAAPAPVSGAGAKRERIVLAGEIPSPADPPSGCRFRTRCWRAEDICAATAPLPEFPLATAPHT
AACHFPLEGAPIVNGGRSMGR

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=796862 QU709_RS44830 WP_306504190.1 10045714..10046739(-) (amiE) [Streptomyces sp. YU58 strain SX92]
ATGCCTGAGCCCGCACCGCTGCTGGAGGCCACCGGCCTGACCAAGAGTTTCGCGGTACCGCGCACCGCGAAGGGCAGCAC
CAGGCTGCGCGCGGTCGACGGGGTCGACCTGCGGCTGGGGCGCGGGGAGACCCTCGGCCTGGTCGGCGAGTCCGGCTGCG
GGAAGTCCACGCTGGCCAGAATGCTGCTGATGCTGGAGCGTCCCGACGAGGGCACGGTCCGGTTCGACGGCGTCGATCCC
TTCACGCTGTCGGGGGCGCGGCTGCTGGCCTGGCGCCGCAAGGTGCAGATGGTCTTCCAGGATCCGTTCGGCTCGCTCAA
CCCCAGGATGTGCGCGGCGGATCTGATCGGGGAGCCCTGGCTCACCCACCGGGATCTGGTGCCCGCCCGACAACGCGCTG
CGCGCGTGGGCGAGTTGCTGGAGATGGTCGGGCTGCGCACGTCTGACGCGCGCCGTTATCCGCAGGAGTTCTCGGGAGGC
CAGCGGCAGCGGATCGGGATCGCCCGCGCGCTGGCACTGGAGCCCGAGGTCGTCGTCTGCGACGAGCCGGTCTCCGCACT
GGATCTGTCGGTGCAGGCCCAGGTGCTCAACCTGCTGGGCGATCTCCGGGACGAGCTGGGCCTTTCGTACGTGTTCATCT
CGCACGACCTGTCCGTGGTGCGGCACGTGGCCGACCGTGTCGCCGTGATGTACCTGGGCAGGATCGTCGAGTCGGGGCCG
GCCGAGGAGGTCTTCGAGCGGCCGTACCACCCGTACACGGCGGCGCTGCTGTCGGCGGCCCCCGCTCCGGTGTCGGGCGC
CGGGGCGAAGCGGGAGCGGATCGTCCTCGCCGGCGAGATCCCCTCACCGGCCGATCCGCCGTCGGGATGCCGGTTCCGGA
CGCGGTGCTGGCGGGCGGAGGACATCTGCGCCGCAACCGCACCGCTTCCTGAGTTCCCGCTCGCAACCGCACCTCACACG
GCCGCGTGCCACTTCCCGCTGGAGGGGGCGCCGATCGTCAACGGCGGCCGGTCCATGGGCAGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(33-184)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(236-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

39.936

91.789

0.367
  oppD Streptococcus mutans UA159

37.237

97.654

0.364
  amiE Streptococcus thermophilus LMG 18311

39.172

92.082

0.361
  amiE Streptococcus thermophilus LMD-9

39.172

92.082

0.361