Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QU709_RS43120 Genome accession   NZ_CP132593
Coordinates   9674293..9674931 (-) Length   212 a.a.
NCBI ID   WP_306503894.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 9669293..9679931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS43090 (QU709_43105) - 9669324..9670589 (+) 1266 WP_306503889.1 DUF6777 domain-containing protein -
  QU709_RS43095 (QU709_43110) - 9670687..9671145 (+) 459 WP_306503890.1 ATP-binding protein -
  QU709_RS43100 (QU709_43115) - 9671241..9672131 (-) 891 WP_232032567.1 RNA polymerase sigma factor SigF -
  QU709_RS43105 (QU709_43120) - 9672355..9673128 (-) 774 WP_306503891.1 class I SAM-dependent methyltransferase -
  QU709_RS43110 (QU709_43125) - 9673217..9673666 (+) 450 WP_306503892.1 helix-turn-helix domain-containing protein -
  QU709_RS43115 (QU709_43130) clpP 9673689..9674291 (-) 603 WP_306503893.1 ClpP family protease Regulator
  QU709_RS43120 (QU709_43135) clpP 9674293..9674931 (-) 639 WP_306503894.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QU709_RS43125 (QU709_43140) - 9675055..9676260 (-) 1206 WP_306503895.1 epoxide hydrolase family protein -
  QU709_RS43130 (QU709_43145) - 9676395..9676877 (+) 483 WP_306503896.1 VOC family protein -
  QU709_RS43135 (QU709_43150) - 9676932..9677807 (-) 876 WP_306503897.1 aminoglycoside phosphotransferase family protein -
  QU709_RS43140 (QU709_43155) - 9677871..9678794 (-) 924 WP_306503898.1 SGNH/GDSL hydrolase family protein -
  QU709_RS43145 (QU709_43160) - 9678894..9679769 (-) 876 WP_306503899.1 geranyl diphosphate 2-C-methyltransferase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22934.03 Da        Isoelectric Point: 4.9065

>NTDB_id=796855 QU709_RS43120 WP_306503894.1 9674293..9674931(-) (clpP) [Streptomyces sp. YU58 strain SX92]
MTALTALLPRAEDGDTPPSRLDDHLAAQLLDQRIVLLGTQVDEVSANRVCTQLLILSAADPRTDISLYINSPGGSVHAGL
AIYDTMRLIPNDVSTLAMGFAASMGQFLLCGGTPGKRYALPNARIMMHQGSAGIGGTTADIEIQAENLEHTKRTMERLIA
ENTGQSPETIARDGDRDRWFTAEEAREYGMVDRVLESLADVRPAASKRRMGL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=796855 QU709_RS43120 WP_306503894.1 9674293..9674931(-) (clpP) [Streptomyces sp. YU58 strain SX92]
ATGACTGCACTCACCGCGCTCCTGCCGCGGGCCGAGGACGGCGACACCCCGCCCAGCCGCCTCGACGATCATCTGGCCGC
CCAACTGCTCGACCAGCGCATCGTCCTGCTGGGTACCCAGGTCGACGAGGTCTCCGCGAACCGGGTCTGCACCCAGCTGC
TGATCCTGTCCGCGGCGGACCCCCGCACCGACATCAGCCTGTACATCAACAGCCCCGGCGGCTCGGTGCACGCGGGCCTC
GCGATCTACGACACGATGCGGCTCATCCCGAACGACGTCTCGACGCTCGCCATGGGCTTCGCGGCCAGCATGGGCCAGTT
CCTGCTCTGCGGCGGCACACCCGGCAAGCGGTACGCCCTTCCCAACGCGCGCATCATGATGCACCAGGGGTCGGCGGGCA
TCGGCGGCACCACCGCCGACATCGAGATCCAGGCGGAGAACCTGGAGCACACCAAGCGGACCATGGAGCGGCTCATCGCC
GAGAACACGGGCCAGAGTCCGGAGACCATCGCCCGGGACGGCGACCGCGACCGCTGGTTCACGGCCGAGGAGGCCAGGGA
GTACGGCATGGTGGACCGGGTGCTGGAGTCGCTCGCCGACGTCCGCCCGGCCGCGTCGAAGCGACGGATGGGGCTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(25-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.438

83.962

0.415
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.977

81.604

0.392
  clpP Streptococcus pneumoniae Rx1

47.977

81.604

0.392
  clpP Streptococcus pneumoniae D39

47.977

81.604

0.392
  clpP Streptococcus pneumoniae R6

47.977

81.604

0.392
  clpP Streptococcus pneumoniae TIGR4

47.977

81.604

0.392
  clpP Streptococcus pyogenes JRS4

46.286

82.547

0.382
  clpP Streptococcus pyogenes MGAS315

46.286

82.547

0.382
  clpP Lactococcus lactis subsp. cremoris KW2

46.286

82.547

0.382
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.714

82.547

0.377
  clpP Streptococcus thermophilus LMG 18311

45.665

81.604

0.373
  clpP Streptococcus thermophilus LMD-9

45.665

81.604

0.373
  clpP Streptococcus mutans UA159

44.571

82.547

0.368