Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PYW38_RS25640 Genome accession   NZ_CP118958
Coordinates   4898675..4900024 (-) Length   449 a.a.
NCBI ID   WP_033713849.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4893675..4905024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW38_RS25605 - 4893796..4894491 (-) 696 WP_033734325.1 hypothetical protein -
  PYW38_RS25610 - 4894478..4895266 (-) 789 WP_002129925.1 hypothetical protein -
  PYW38_RS25615 - 4895298..4895882 (-) 585 WP_003192372.1 hypothetical protein -
  PYW38_RS25620 - 4896001..4896495 (-) 495 WP_016127674.1 hypothetical protein -
  PYW38_RS25625 hpf 4896784..4897326 (-) 543 WP_002089603.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PYW38_RS25630 cspC 4897647..4897844 (-) 198 WP_001990088.1 cold shock protein CspC -
  PYW38_RS25635 - 4897971..4898675 (-) 705 WP_002129929.1 ComF family protein -
  PYW38_RS25640 comFA 4898675..4900024 (-) 1350 WP_033713849.1 ATP-dependent helicase ComFA Machinery gene
  PYW38_RS25645 - 4900155..4901619 (-) 1465 Protein_4993 NlpC/P60 family protein -
  PYW38_RS25650 - 4901754..4902068 (-) 315 WP_002089608.1 winged helix-turn-helix transcriptional regulator -
  PYW38_RS25655 - 4902231..4903073 (-) 843 WP_002016143.1 DegV family protein -
  PYW38_RS25660 - 4903312..4903947 (+) 636 WP_003192381.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 50899.23 Da        Isoelectric Point: 9.2544

>NTDB_id=796855 PYW38_RS25640 WP_033713849.1 4898675..4900024(-) (comFA) [Bacillus mycoides strain DSM 2048]
MLAGRQLLLEELSSDLQDKLDHLKRNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFVSLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGVLSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVENLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=796855 PYW38_RS25640 WP_033713849.1 4898675..4900024(-) (comFA) [Bacillus mycoides strain DSM 2048]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTCTCTTCAGATTTGCAGGATAAATTGGATCATCTGAAAAGGAATCG
AGACGTCGTTTGTGTACAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGTATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCGTTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGTTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGAGGAGTAACTGTTGAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAAGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-409)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.567

98.218

0.497
  comFA Latilactobacillus sakei subsp. sakei 23K

40.955

88.641

0.363