Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PYW38_RS21255 Genome accession   NZ_CP118958
Coordinates   4102893..4103639 (-) Length   248 a.a.
NCBI ID   WP_002129136.1    Uniprot ID   A0A366GTN2
Organism   Bacillus mycoides strain DSM 2048     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4097893..4108639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW38_RS21235 dnaG 4098620..4100422 (-) 1803 WP_002129132.1 DNA primase -
  PYW38_RS21240 - 4100504..4100647 (-) 144 WP_162836445.1 hypothetical protein -
  PYW38_RS21245 - 4101312..4102124 (-) 813 WP_002015180.1 pyruvate, water dikinase regulatory protein -
  PYW38_RS21250 - 4102154..4102786 (-) 633 WP_002015181.1 helix-turn-helix transcriptional regulator -
  PYW38_RS21255 recO 4102893..4103639 (-) 747 WP_002129136.1 DNA repair protein RecO Machinery gene
  PYW38_RS21260 - 4103673..4103816 (-) 144 WP_000883924.1 YqzL family protein -
  PYW38_RS21265 era 4103993..4104898 (-) 906 WP_002088672.1 GTPase Era -
  PYW38_RS21270 - 4104891..4105289 (-) 399 WP_002015184.1 cytidine deaminase -
  PYW38_RS21275 - 4105389..4105742 (-) 354 WP_002129138.1 diacylglycerol kinase family protein -
  PYW38_RS21280 ybeY 4105739..4106209 (-) 471 WP_002088675.1 rRNA maturation RNase YbeY -
  PYW38_RS21285 - 4106206..4108350 (-) 2145 WP_003191481.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28668.23 Da        Isoelectric Point: 8.0540

>NTDB_id=796845 PYW38_RS21255 WP_002129136.1 4102893..4103639(-) (recO) [Bacillus mycoides strain DSM 2048]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=796845 PYW38_RS21255 WP_002129136.1 4102893..4103639(-) (recO) [Bacillus mycoides strain DSM 2048]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCGCG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAGCCGAAGAGTCGGTTAGCAGCTATTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTATTGAATTAACCGATAAAGCAACAGAAGATAAGAAGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAGCAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTTGATTTACACCGGCTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGACGAATATTGTGGGATTTATTTGAAAACAAGGCGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GTN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552