Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PYW38_RS20625 Genome accession   NZ_CP118958
Coordinates   3995991..3996785 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain DSM 2048     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3990991..4001785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW38_RS20585 - 3991447..3991593 (+) 147 WP_001247671.1 YycC family protein -
  PYW38_RS20590 - 3991834..3992397 (-) 564 WP_002167694.1 PRK06770 family protein -
  PYW38_RS20595 - 3992695..3992793 (-) 99 Protein_4014 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  PYW38_RS20600 - 3993032..3993307 (-) 276 WP_002129035.1 hypothetical protein -
  PYW38_RS20605 - 3993348..3993953 (-) 606 WP_002167693.1 immunity protein Imm33 domain-containing protein -
  PYW38_RS20610 - 3993937..3994092 (-) 156 WP_002129038.1 hypothetical protein -
  PYW38_RS20615 - 3994129..3994701 (-) 573 WP_002138281.1 imm11 family protein -
  PYW38_RS20620 - 3994779..3995243 (-) 465 Protein_4019 ribonuclease -
  PYW38_RS20625 spo0A 3995991..3996785 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  PYW38_RS20630 spoIVB 3997072..3998364 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  PYW38_RS20635 recN 3998484..4000223 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  PYW38_RS20640 argR 4000494..4000943 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=796842 PYW38_RS20625 WP_002015081.1 3995991..3996785(-) (spo0A) [Bacillus mycoides strain DSM 2048]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=796842 PYW38_RS20625 WP_002015081.1 3995991..3996785(-) (spo0A) [Bacillus mycoides strain DSM 2048]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818