Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PYW38_RS19750 Genome accession   NZ_CP118958
Coordinates   3841769..3842203 (-) Length   144 a.a.
NCBI ID   WP_002014817.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3836769..3847203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW38_RS19735 - 3837911..3838468 (+) 558 WP_002128898.1 PadR family transcriptional regulator -
  PYW38_RS19740 metE 3839010..3841298 (+) 2289 WP_002014819.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  PYW38_RS19745 comJ 3841340..3841729 (-) 390 WP_002088359.1 competence protein ComJ -
  PYW38_RS19750 nucA/comI 3841769..3842203 (-) 435 WP_002014817.1 DNA-entry nuclease Machinery gene
  PYW38_RS19755 - 3842440..3843183 (+) 744 WP_002014816.1 DUF3967 domain-containing protein -
  PYW38_RS19760 - 3843243..3844517 (-) 1275 WP_002014814.1 sensor histidine kinase -
  PYW38_RS19765 - 3844827..3845027 (+) 201 WP_000929276.1 hypothetical protein -
  PYW38_RS19770 - 3845262..3846425 (+) 1164 WP_002128899.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16194.59 Da        Isoelectric Point: 8.4331

>NTDB_id=796841 PYW38_RS19750 WP_002014817.1 3841769..3842203(-) (nucA/comI) [Bacillus mycoides strain DSM 2048]
MKQFKGIIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=796841 PYW38_RS19750 WP_002014817.1 3841769..3842203(-) (nucA/comI) [Bacillus mycoides strain DSM 2048]
ATGAAGCAATTTAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCGGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAACGATATCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGACATTCGGAAATGTGTACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCTCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542