Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PYW38_RS09840 Genome accession   NZ_CP118958
Coordinates   1896311..1896598 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain DSM 2048     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1891311..1901598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW38_RS09820 - 1892501..1892688 (+) 188 Protein_1855 DUF4083 domain-containing protein -
  PYW38_RS09825 - 1892716..1893177 (+) 462 WP_002130989.1 NUDIX hydrolase -
  PYW38_RS09830 nadE 1893222..1894040 (-) 819 WP_002012398.1 ammonia-dependent NAD(+) synthetase -
  PYW38_RS09835 - 1894311..1896191 (+) 1881 WP_002012400.1 FtsX-like permease family protein -
  PYW38_RS09840 abrB 1896311..1896598 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PYW38_RS09845 - 1896929..1897879 (+) 951 WP_002012402.1 serine protease -
  PYW38_RS09850 - 1897920..1898228 (-) 309 WP_002012403.1 ArsR/SmtB family transcription factor -
  PYW38_RS09855 - 1898336..1899271 (+) 936 WP_003188755.1 aldo/keto reductase -
  PYW38_RS09860 - 1899321..1899524 (+) 204 WP_002012406.1 hypothetical protein -
  PYW38_RS09865 - 1899555..1899779 (-) 225 WP_002012407.1 hypothetical protein -
  PYW38_RS09870 - 1899864..1900211 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -
  PYW38_RS09875 - 1900408..1900934 (+) 527 Protein_1866 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=796833 PYW38_RS09840 WP_002012401.1 1896311..1896598(+) (abrB) [Bacillus mycoides strain DSM 2048]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=796833 PYW38_RS09840 WP_002012401.1 1896311..1896598(+) (abrB) [Bacillus mycoides strain DSM 2048]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGTATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558