Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PYW38_RS06575 Genome accession   NZ_CP118958
Coordinates   1271275..1271598 (-) Length   107 a.a.
NCBI ID   WP_002030429.1    Uniprot ID   A0A084J505
Organism   Bacillus mycoides strain DSM 2048     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266275..1276598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW38_RS06550 - 1266422..1267708 (+) 1287 WP_002126097.1 D-alanyl-D-alanine carboxypeptidase family protein -
  PYW38_RS06555 sipW 1267905..1268474 (+) 570 WP_002064334.1 signal peptidase I SipW -
  PYW38_RS06560 - 1268537..1269124 (+) 588 WP_000172837.1 CalY family protein -
  PYW38_RS06565 - 1269286..1270155 (+) 870 WP_033733844.1 DUF4047 domain-containing protein -
  PYW38_RS06570 calY 1270599..1271192 (+) 594 WP_002126106.1 biofilm matrix protein CalY -
  PYW38_RS06575 sinR 1271275..1271598 (-) 324 WP_002030429.1 helix-turn-helix domain-containing protein Regulator
  PYW38_RS06580 - 1271678..1271812 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  PYW38_RS06585 inhA1 1272155..1274542 (+) 2388 WP_002126109.1 M6 family metalloprotease immune inhibitor InhA1 -
  PYW38_RS06590 - 1274713..1276080 (+) 1368 WP_016126727.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=796830 PYW38_RS06575 WP_002030429.1 1271275..1271598(-) (sinR) [Bacillus mycoides strain DSM 2048]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=796830 PYW38_RS06575 WP_002030429.1 1271275..1271598(-) (sinR) [Bacillus mycoides strain DSM 2048]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084J505

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692