Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QU709_RS29210 Genome accession   NZ_CP132593
Coordinates   6563497..6565230 (-) Length   577 a.a.
NCBI ID   WP_306501623.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6558497..6570230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS29200 (QU709_29210) - 6560160..6561467 (+) 1308 WP_232027276.1 RNA polymerase sigma factor -
  QU709_RS29205 (QU709_29215) rcrQ 6561569..6563497 (-) 1929 WP_306501622.1 ABC transporter ATP-binding protein Regulator
  QU709_RS29210 (QU709_29220) rcrP 6563497..6565230 (-) 1734 WP_306501623.1 ABC transporter ATP-binding protein Regulator
  QU709_RS29215 (QU709_29225) - 6565410..6566864 (-) 1455 WP_306501624.1 xylulokinase -
  QU709_RS29220 (QU709_29230) - 6567040..6567345 (-) 306 WP_306501625.1 YtxH domain-containing protein -
  QU709_RS29240 (QU709_29250) - 6568058..6569941 (-) 1884 WP_306501626.1 site-specific integrase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62318.44 Da        Isoelectric Point: 5.2363

>NTDB_id=796828 QU709_RS29210 WP_306501623.1 6563497..6565230(-) (rcrP) [Streptomyces sp. YU58 strain SX92]
MLIRLLRAYLRPYKKPIWLLVLLQFLQTCATLYLPTLNADIIDNGVVNGDTGYILGYGALMIGISLVQVVCNIGAVYYGA
KTASAVGRDLRGAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPTLGICVTLIVRRLRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDGYEEERFRKSNTDLTDVALKTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PLAPVRELRRHGHLEIRGAGFCYPGAEEPVLKAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVPVA
EVDPELLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVSGLENGLDSPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAAETSEATVVIVAQRVATIRDADRIVVLDEGRVVGTGSHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=796828 QU709_RS29210 WP_306501623.1 6563497..6565230(-) (rcrP) [Streptomyces sp. YU58 strain SX92]
GTGCTCATACGACTTCTGCGGGCCTACCTCAGGCCCTACAAGAAACCCATCTGGCTCCTGGTACTGCTCCAGTTCCTCCA
GACCTGCGCCACGCTGTATCTGCCCACGCTCAACGCGGACATCATCGACAACGGCGTGGTGAACGGGGACACCGGCTACA
TCCTCGGCTACGGCGCCCTGATGATCGGCATCTCCCTGGTGCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
AAGACCGCCTCGGCGGTCGGCCGGGACCTGCGGGGGGCGGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTGTTGGTGTCGGCACCCATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTACCGCTCTCCGGCGTG
CTGGTGGCCGTGGTGCCGACGCTGGGCATCTGCGTGACGTTGATCGTACGGCGGCTGCGCCCGCTGTTCCGGTCCATGCA
GGTGAAGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGGGACG
GCTACGAGGAGGAGCGCTTCCGGAAGTCCAACACCGACCTCACCGACGTCGCGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGTGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCTCGTCGTCCGTGGTGCCG
CCGCTGGCGCCGGTGCGGGAGCTGCGGCGGCACGGGCATCTGGAGATCCGCGGGGCCGGGTTCTGCTATCCGGGTGCCGA
GGAGCCGGTGCTCAAGGCGATCGACCTGGTGGCCCGTCCCGGTGAGGTGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTCCTCGGGCTGGTGCCCCGGCTGTTCGACGCGACCGACGGCGAGGTGCTCGTCGACGGGGTGCCGGTGGCG
GAGGTCGACCCCGAGCTGCTGGCCAAGACCGTCGGGCTCGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTGGCGAC
CAATCTGCGCTACGGCAATCCCGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCAGCGGCCTGGAGAACGGCCTCGACTCCCCCGTCGCGCAGGGCGGCACCAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGGACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACTACGCGACCGA
CGCGGCCCTGAGGGCGGCGCTGGCCGCGGAGACCTCGGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCAGCCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.422

100

0.388