Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QU709_RS29205 Genome accession   NZ_CP132593
Coordinates   6561569..6563497 (-) Length   642 a.a.
NCBI ID   WP_306501622.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6556569..6568497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS29190 (QU709_29200) - 6556600..6557865 (+) 1266 WP_306501620.1 NAD(P)/FAD-dependent oxidoreductase -
  QU709_RS29195 (QU709_29205) dnaG 6557995..6559902 (+) 1908 WP_306501621.1 DNA primase -
  QU709_RS29200 (QU709_29210) - 6560160..6561467 (+) 1308 WP_232027276.1 RNA polymerase sigma factor -
  QU709_RS29205 (QU709_29215) rcrQ 6561569..6563497 (-) 1929 WP_306501622.1 ABC transporter ATP-binding protein Regulator
  QU709_RS29210 (QU709_29220) rcrP 6563497..6565230 (-) 1734 WP_306501623.1 ABC transporter ATP-binding protein Regulator
  QU709_RS29215 (QU709_29225) - 6565410..6566864 (-) 1455 WP_306501624.1 xylulokinase -
  QU709_RS29220 (QU709_29230) - 6567040..6567345 (-) 306 WP_306501625.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69746.22 Da        Isoelectric Point: 6.1610

>NTDB_id=796827 QU709_RS29205 WP_306501622.1 6561569..6563497(-) (rcrQ) [Streptomyces sp. YU58 strain SX92]
MAGPMGRMMAGTGPENRSLDFKVSGKRLLTHFRPERFTLYAMLVCVVLSVGLNVIGPKILGKATDLVFAGIIGRQMPEGA
SKEQVLDSMRERGDGSAADMLRSTDFTPGKGIDFTAVAHVLLFALGVFLVAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSLGQLINSLLTIIGVLAVMFWVSWLLALVALVTVPLSAVVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHTLVKVFGRQEESAAQFAEQNEALYEAGFRAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQQADPVPGVRPEELRGRVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDVAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGGHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=796827 QU709_RS29205 WP_306501622.1 6561569..6563497(-) (rcrQ) [Streptomyces sp. YU58 strain SX92]
ATGGCCGGGCCCATGGGGCGCATGATGGCGGGCACCGGCCCGGAGAACCGCTCGCTGGACTTCAAGGTGTCCGGCAAACG
GCTGCTCACGCACTTCCGGCCGGAGCGGTTCACCCTCTACGCGATGCTGGTCTGCGTGGTGCTGAGCGTCGGCCTGAACG
TGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGACGGCAGATGCCGGAGGGTGCC
AGCAAGGAGCAGGTCCTCGACTCCATGCGCGAGCGCGGCGACGGCTCCGCCGCGGACATGCTCAGGAGCACCGACTTCAC
GCCCGGCAAGGGCATCGACTTCACCGCCGTAGCGCATGTGCTGCTGTTCGCGCTCGGGGTGTTCCTCGTCGCCGGGCTGT
TGATGGCGGTGGCGACGCGGCTGGTCAACCGGGCCGTCAACCGCACGATGTTCCGGATGCGGGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGCCAGACCCTCCAGCAGTCGCTGGGACAGCTCATCAACTCCCTGCTGACGATCATCGGCGTGCTCGCGGTGATGT
TCTGGGTCTCCTGGCTGCTCGCCCTGGTCGCGCTGGTCACCGTGCCGCTGTCGGCGGTCGTCGCCACGCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTCCAGCAGTGGCGCTCGACCGGGAAGCTCAACGCCCATATCGAGGAGATGTACACCGGTCA
CACGCTGGTGAAGGTGTTCGGGCGCCAGGAGGAGTCGGCCGCGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGG
GCTTCAGGGCGCAGTTCAACAGCGGGGTGATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTGGCG
GTCGTCGGGGGCCTGCGGGTCGCGTCCGGCTCCCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACCCAGGTCGCCTCCATGGCGAACCTCGTGCAGTCGGGCGTCGCCTCCGCCGAGCGGATCTTCGAAC
TCCTCGACGCGGAGGAGCAGCAGGCGGACCCCGTGCCGGGCGTACGGCCCGAGGAACTGCGCGGACGCGTCGCCCTGGAG
CACGTGTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCCCTGACGGTGGAGCCGGGGCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACGACCCTCGTGAACCTCCTCATGCGGTTCTACGACGTCTCCGGCGGCCGTA
TCACCCTCGACGGCGTCGACGTCGCGAAGATGTCCCGGGACGAACTGCGCGCCGGGATCGGCATGGTCCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCCCGGGAGGTGACCCGGGGCGAGATCGAGGAAGC
CGCGCGGGCCGCCCACGCCGACCGCTTCATCCGCACCCTGCCCGACGGCTACGACACCGTCATCGACGACGAGGGCAGCG
GGGTGAGCGCGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTGGACGAG
GCGACGTCGTCCGTGGACACCCGTACGGAGGTGTTGATCCAGAAGGCGATGGCGAAGCTTGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGGTCGATCGTGGAACAGG
GCGGCCATGCGGAGCTGCTGGCCGCGGACGGGGCGTATGCGCGGTTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAA
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.752

84.891

0.363