Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PYW32_RS03655 Genome accession   NZ_CP118957
Coordinates   695707..697392 (+) Length   561 a.a.
NCBI ID   WP_016175680.1    Uniprot ID   -
Organism   Enterococcus saccharolyticus subsp. saccharolyticus strain DSM 20726     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 690707..702392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW32_RS03625 - 691001..691855 (+) 855 WP_016175686.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  PYW32_RS03630 xseA 691857..693206 (+) 1350 WP_016175685.1 exodeoxyribonuclease VII large subunit -
  PYW32_RS03635 - 693187..693408 (+) 222 WP_016175684.1 exodeoxyribonuclease VII small subunit -
  PYW32_RS03640 - 693405..694289 (+) 885 WP_016175683.1 polyprenyl synthetase family protein -
  PYW32_RS03645 - 694305..695123 (+) 819 WP_016175682.1 TlyA family RNA methyltransferase -
  PYW32_RS03650 argR 695243..695695 (+) 453 WP_016175681.1 arginine repressor -
  PYW32_RS03655 recN 695707..697392 (+) 1686 WP_016175680.1 DNA repair protein RecN Machinery gene
  PYW32_RS03660 - 697450..697566 (-) 117 WP_016175679.1 DUF4044 domain-containing protein -
  PYW32_RS03665 - 697776..698144 (+) 369 WP_016175678.1 DUF3397 domain-containing protein -
  PYW32_RS03670 mraZ 698318..698749 (+) 432 WP_016175677.1 division/cell wall cluster transcriptional repressor MraZ -
  PYW32_RS03675 rsmH 698764..699720 (+) 957 WP_016175676.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  PYW32_RS03680 ftsL 699726..700118 (+) 393 WP_016175675.1 cell division protein FtsL -
  PYW32_RS03685 - 700119..702332 (+) 2214 WP_016175674.1 penicillin-binding transpeptidase domain-containing protein -

Sequence

Protein


Download         Length: 561 a.a.        Molecular weight: 63412.77 Da        Isoelectric Point: 4.5212

>NTDB_id=796791 PYW32_RS03655 WP_016175680.1 695707..697392(+) (recN) [Enterococcus saccharolyticus subsp. saccharolyticus strain DSM 20726]
MLLELTIENFAIIPKLHLSFHQGMTALTGETGAGKSIIIDAMGLLAGSRGSSDYIRQGADKCLLEGLFELPQQNGFQQVM
DELGIDCSEDVLIVQRDMSISGKSVCRVNGRTVTLANLRRIGMYLVDIQGQNEHQELLQADKHLSLMDSFGSQDFQHALA
NYQTHYHEFRQLEKQVRKIQSNEQSYVQRMDMLRFQQEEIEQAKLQPDEEELLVEERDKLSNFQKIVDALAKAYGVLSSE
TGNSLDGVSIALNEMQGIAHLDNDYEQINENIQNAYYLLQDAASDISRQMDRLELDEGRLEEVVLRLEIIRQLKRKYGDS
IPTILAYYDKISEELSAATMTEGQLEELEAQLAEKQQYVWQLAEVLHVKRQEIAQQLEQEILQELSELYMENTQFDIHFE
TGKTLRDTGFDQVEFYLSTNPGEPLKPLVKVASGGELSRILLALKTIFSKTQEMTSIVFDEVDTGVSGRVAQAIAEKIAK
IADNSQVLCITHLPQVAAVADYQYFISKAVKDGRTQTHVVQLTNEERVDEVARMLAGAEITELTLEHARELLRIAGKVAH
R

Nucleotide


Download         Length: 1686 bp        

>NTDB_id=796791 PYW32_RS03655 WP_016175680.1 695707..697392(+) (recN) [Enterococcus saccharolyticus subsp. saccharolyticus strain DSM 20726]
ATGCTACTAGAGCTAACGATTGAAAATTTTGCGATTATTCCCAAACTGCATTTAAGTTTTCATCAAGGCATGACGGCATT
AACAGGTGAAACAGGTGCCGGGAAATCTATCATTATTGATGCGATGGGCTTATTAGCTGGCAGTCGTGGTTCCAGTGATT
ACATTCGCCAAGGAGCAGACAAATGCTTGTTGGAAGGATTATTTGAACTGCCACAACAAAATGGTTTTCAACAAGTGATG
GATGAATTAGGCATTGATTGTTCAGAAGACGTATTAATCGTTCAACGCGACATGTCTATTTCAGGAAAAAGTGTTTGTCG
TGTGAATGGTCGGACAGTGACCTTAGCAAATTTGCGTCGTATCGGGATGTATTTAGTAGACATTCAAGGACAAAATGAAC
ACCAAGAACTCCTGCAAGCAGACAAACATTTATCATTAATGGATAGTTTTGGTTCGCAAGACTTTCAACATGCTTTAGCA
AATTATCAAACACATTATCATGAATTTCGTCAATTAGAAAAACAAGTACGTAAAATTCAATCAAATGAACAATCTTATGT
GCAACGAATGGATATGTTACGTTTTCAGCAAGAAGAAATTGAACAAGCCAAGTTACAACCGGATGAAGAAGAACTTTTAG
TTGAAGAACGTGATAAGTTAAGTAACTTCCAAAAAATTGTTGATGCACTTGCTAAAGCATATGGCGTACTTTCTTCTGAA
ACAGGTAATAGTTTGGATGGTGTGAGCATTGCCTTAAATGAAATGCAAGGAATTGCACATTTAGACAATGATTATGAACA
GATTAACGAAAATATTCAAAATGCCTATTATTTATTACAAGATGCGGCGAGTGATATTTCTCGGCAAATGGATCGATTAG
AATTAGATGAAGGACGTTTAGAAGAAGTCGTTCTTCGTTTAGAAATCATCCGTCAATTGAAGCGAAAATATGGCGATTCA
ATTCCAACTATTTTAGCGTATTATGATAAAATTTCAGAAGAACTATCTGCCGCTACCATGACTGAAGGACAATTAGAAGA
ATTAGAAGCACAATTAGCAGAAAAACAGCAATATGTTTGGCAATTAGCAGAAGTACTACATGTCAAACGTCAAGAGATTG
CGCAACAACTGGAACAAGAAATTTTACAAGAATTATCAGAACTATATATGGAAAATACCCAGTTTGATATCCATTTTGAA
ACTGGAAAAACGTTACGTGACACTGGTTTTGATCAAGTAGAGTTTTATTTAAGTACTAATCCAGGAGAACCGCTAAAACC
ATTAGTAAAAGTGGCTTCTGGAGGAGAATTGTCTCGTATTTTATTAGCGTTAAAGACGATTTTTTCCAAAACACAAGAAA
TGACCAGTATTGTTTTCGATGAAGTCGATACAGGCGTAAGTGGTCGGGTTGCTCAAGCGATTGCTGAAAAAATTGCGAAG
ATTGCTGATAATTCACAAGTATTATGTATTACTCATTTGCCACAAGTTGCTGCAGTCGCAGATTACCAATATTTTATTTC
GAAAGCAGTCAAAGATGGGCGCACTCAAACCCATGTTGTTCAATTGACAAATGAAGAGCGTGTTGATGAAGTGGCTCGGA
TGTTAGCTGGCGCTGAAATTACGGAATTAACTTTAGAACATGCACGTGAATTGTTACGAATTGCTGGGAAAGTTGCACAT
CGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.492