Detailed information NTG0796733

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PYW36_RS10230
• Genome accession: NZ_CP118953
• Coordinates: 2090771..2092144 (-)
• Length: 457 a.a.
• NCBI ID: WP_103158778.1
• Uniprot ID: -
• Organism: Staphylococcus chromogenes strain DSM 20454
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2085771..2097144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYW36_RS10205	cysE	2086023..2086661 (-)	639	WP_258026740.1	serine O-acetyltransferase	-
PYW36_RS10210	gltX	2086989..2088443 (-)	1455	WP_103158774.1	glutamate--tRNA ligase	-
PYW36_RS10215	ispF	2088520..2088999 (-)	480	WP_103158775.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PYW36_RS10220	ispD	2088992..2089690 (-)	699	WP_103158776.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PYW36_RS10225	-	2089690..2090754 (-)	1065	WP_103158777.1	PIN/TRAM domain-containing protein	-
PYW36_RS10230	radA	2090771..2092144 (-)	1374	WP_103158778.1	DNA repair protein RadA	Machinery gene
PYW36_RS10235	-	2092271..2094757 (-)	2487	WP_103158779.1	ATP-dependent Clp protease ATP-binding subunit	-
PYW36_RS10240	-	2094770..2095774 (-)	1005	WP_037573001.1	protein arginine kinase	-
PYW36_RS10245	-	2095758..2096177 (-)	420	Protein_1987	UvrB/UvrC motif-containing protein	-
PYW36_RS10250	-	2096309..2096770 (-)	462	WP_103158780.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50196.80 Da
• Isoelectric Point: 8.0060

>NTDB_id=796733 PYW36_RS10230 WP_103158778.1 2090771..2092144(-) (radA) [Staphylococcus chromogenes strain DSM 20454]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKTAHPKHGVHTQKTTQSKIQTLNEVKNEKTPRILTNSQEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKGKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVQPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLSIIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPENIEVIGVTSTNEALKYALKSK

Nucleotide

• Length: 1374 bp

>NTDB_id=796733 PYW36_RS10230 WP_103158778.1 2090771..2092144(-) (radA) [Staphylococcus chromogenes strain DSM 20454]
GTGGCCAAGAAAAAAGTCATATTTGAATGTACTGCATGTGGTTATCAATCTCCGAAGTGGATGGGGAAATGTCCTAACTG
TGGCGCATGGAATTCCATGGAAGAATCGTTAGAACAAAAAACAGCACACCCGAAACATGGGGTACATACACAAAAGACGA
CACAATCAAAAATTCAAACGCTCAACGAAGTAAAGAATGAAAAAACACCACGTATTTTAACGAATAGCCAAGAGTTTAAC
CGTGTTTTAGGTGGCGGTATTGTCCAAGGTTCTCTTGTTTTAATCGGAGGAGACCCAGGGATAGGAAAGTCAACATTGTT
ACTTCAAATGTGCGCTGCGTTATCAAAAGGAAAGAAAGTGCTATATATTACTGGAGAAGAATCATTAAACCAAACTAAAT
TACGTGCCGATCGTTTAGATGAAGATGCGAGTGCTTTAAATGTATTTGCAGAAACGGATTTAGAGGTGATTCATGAAGCA
GTAAAAAAAGTACAACCCGAGCTCATCGTTGTAGACTCTATTCAAACGATTTATCACCCAGAAATTAGTTCTGCACCTGG
TTCTGTGTCTCAGGTACGTGAAAGTACACAAAGTTTAATGCATATTGCCAAACAGATGAATATTGCCACGTTTATCGTGG
GGCACGTGACAAAAGAAGGACAAATTGCGGGTCCTAGATTATTAGAACATATGGTGGATACCGTGCTTTATTTTGAAGGT
GATGAGCATCATGCTTATCGTATTTTACGTGCGGTGAAAAACCGCTTTGGTTCAACGAATGAAATGGGCATTTTTGAAAT
GAAACAAGCAGGTCTTAAAAGTGTCCCGAATCCTTCTGAAATGTTTTTAGAAGAGCGATCAACGAATGTTCCGGGGTCGA
CGATTGTCGCCACTATGGAAGGGACACGTCCGCTATTAATAGAAGTCCAAGCCCTCGTCACACCGACCACATTTAATAAT
CCTAGACGAATGGCGACGGGGATTGATCACAACCGTTTAAGTCTATTGATGGCCGTATTAGAGAAAAAAGAGGGGTATCT
GTTACAACAACAAGATGCCTACATCAAAGTGGCAGGTGGCGTCAAATTAAGTGAACCTGCTGTGGATTTAAGCATCATTA
TTGCGACAGCCTCAAGCTTTAAAGACCAAGCCGTTGATGGGTTAGACTGTTTTATTGGTGAAGTTGGTTTGACAGGTGAG
GTACGCCGTGTCTCTCGAATTGAGCAAAGAGTTCAAGAAGCAGCAAAATTAGGGTTTAAACGTGTGATTATACCGAAAAC
GAATATTGGGGGATGGACCTTCCCAGAAAACATTGAAGTTATCGGTGTGACCTCAACAAACGAAGCATTAAAATATGCTT
TGAAATCTAAATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (70-220)

• Subunit ChlI of Mg-chelatase (ChlI) (345-428)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	66.083	100	0.661
radA	Streptococcus pneumoniae Rx1	59.867	98.687	0.591
radA	Streptococcus pneumoniae D39	59.867	98.687	0.591
radA	Streptococcus pneumoniae R6	59.867	98.687	0.591
radA	Streptococcus pneumoniae TIGR4	59.867	98.687	0.591
radA	Streptococcus mitis NCTC 12261	59.867	98.687	0.591
radA	Streptococcus mitis SK321	59.867	98.687	0.591