Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RA165_RS14900 Genome accession   NZ_CP132550
Coordinates   2766677..2767159 (+) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli strain XL1-Blue     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2761677..2772159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA165_RS14875 - 2762293..2762445 (-) 153 Protein_2654 glutaredoxin domain-containing protein -
  RA165_RS14880 - 2762458..2763467 (-) 1010 Protein_2655 arsenic transporter -
  RA165_RS14885 yfjW 2763609..2765312 (+) 1704 WP_000896263.1 protein YfjW -
  RA165_RS14890 - 2765884..2766107 (+) 224 Protein_2657 DUF905 family protein -
  RA165_RS14895 yfjX 2766210..2766668 (+) 459 WP_000211841.1 antirestriction protein -
  RA165_RS14900 radC 2766677..2767159 (+) 483 WP_001407480.1 RadC family protein Machinery gene
  RA165_RS14905 ypjJ 2767168..2767368 (+) 201 WP_001395452.1 DUF987 domain-containing protein -
  RA165_RS14910 yfjZ 2767406..2767723 (+) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  RA165_RS14915 ypjF 2767744..2768073 (+) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=796714 RA165_RS14900 WP_001407480.1 2766677..2767159(+) (radC) [Escherichia coli strain XL1-Blue]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=796714 RA165_RS14900 WP_001407480.1 2766677..2767159(+) (radC) [Escherichia coli strain XL1-Blue]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375