Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PYW36_RS03720 Genome accession   NZ_CP118953
Coordinates   790263..790985 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain DSM 20454     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 785263..795985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW36_RS03700 - 786340..786441 (+) 102 Protein_722 redox-sensing transcriptional repressor Rex -
  PYW36_RS03705 - 786613..787695 (+) 1083 WP_037575667.1 YeeE/YedE family protein -
  PYW36_RS03710 - 787717..787941 (+) 225 WP_037575670.1 sulfurtransferase TusA family protein -
  PYW36_RS03715 - 788282..789766 (+) 1485 WP_103159706.1 sucrose-6-phosphate hydrolase -
  PYW36_RS03720 agrA 790263..790985 (-) 723 WP_037575675.1 LytTR family DNA-binding domain-containing protein Regulator
  PYW36_RS03725 - 791000..791794 (-) 795 WP_245173718.1 GHKL domain-containing protein -
  PYW36_RS03730 - 792327..792461 (-) 135 WP_103159704.1 cyclic lactone autoinducer peptide -
  PYW36_RS03735 - 792465..793028 (-) 564 WP_103159703.1 accessory gene regulator AgrB -
  PYW36_RS03740 - 793676..794473 (-) 798 WP_103159702.1 carbon-nitrogen family hydrolase -
  PYW36_RS03745 - 794653..795768 (+) 1116 WP_103159701.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=796712 PYW36_RS03720 WP_037575675.1 790263..790985(-) (agrA) [Staphylococcus chromogenes strain DSM 20454]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=796712 PYW36_RS03720 WP_037575675.1 790263..790985(-) (agrA) [Staphylococcus chromogenes strain DSM 20454]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTGCTCGAAGCTTCTAAAAACATGAATGATATCG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATTTAACATTCGTATACAAGTTGGCGGCCATGGATTT
TATTTTTAAAGATGACGTCGATGAGTTACGCACGCGAGTCATTGATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACGAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTCTTATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGATGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813