Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   PYW30_RS09660 Genome accession   NZ_CP118950
Coordinates   1926530..1927573 (-) Length   347 a.a.
NCBI ID   WP_042218963.1    Uniprot ID   -
Organism   Lactococcus garvieae subsp. garvieae strain DSM 20684     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1921530..1932573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW30_RS09645 rpsB 1921564..1922337 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  PYW30_RS09650 - 1922610..1923650 (+) 1041 WP_042218960.1 lactonase family protein -
  PYW30_RS09655 adhE 1923805..1926498 (+) 2694 WP_003133155.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  PYW30_RS09660 sepM 1926530..1927573 (-) 1044 WP_042218963.1 SepM family pheromone-processing serine protease Regulator
  PYW30_RS09665 coaD 1927563..1928060 (-) 498 WP_042218964.1 pantetheine-phosphate adenylyltransferase -
  PYW30_RS09670 rsmD 1928050..1928589 (-) 540 WP_014025494.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PYW30_RS09675 - 1928683..1930029 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37788.12 Da        Isoelectric Point: 6.9722

>NTDB_id=796702 PYW30_RS09660 WP_042218963.1 1926530..1927573(-) (sepM) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTDMIDYVSQQKVGDEVTIKYTRMDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDCLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=796702 PYW30_RS09660 WP_042218963.1 1926530..1927573(-) (sepM) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAATCAGATGGTTGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTACGGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAAAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGCCACACTTTCAAATCTTCAACTGATATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGATGGATGGCAGCAACCATGAAGCCACAGGCAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAGATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCTGGTACAACAAATAACTACACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTGTCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.703

100

0.487