Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | PYW30_RS07855 | Genome accession | NZ_CP118950 |
| Coordinates | 1575589..1577835 (-) | Length | 748 a.a. |
| NCBI ID | WP_003134200.1 | Uniprot ID | A0AA43PGJ7 |
| Organism | Lactococcus garvieae subsp. garvieae strain DSM 20684 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1570589..1582835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYW30_RS07825 | - | 1571002..1571184 (-) | 183 | WP_275090559.1 | adenine methyltransferase | - |
| PYW30_RS07830 | uvrB | 1571409..1573397 (-) | 1989 | WP_023889516.1 | excinuclease ABC subunit UvrB | - |
| PYW30_RS07835 | - | 1573394..1573849 (-) | 456 | WP_003134193.1 | RNA pyrophosphohydrolase | - |
| PYW30_RS07840 | def | 1573954..1574580 (+) | 627 | WP_023889515.1 | peptide deformylase | - |
| PYW30_RS07845 | - | 1574623..1574868 (-) | 246 | WP_042219490.1 | hypothetical protein | - |
| PYW30_RS07850 | yqeK | 1574943..1575533 (-) | 591 | WP_023889513.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
| PYW30_RS07855 | clpC | 1575589..1577835 (-) | 2247 | WP_003134200.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| PYW30_RS07860 | rpoD | 1578057..1579283 (-) | 1227 | WP_308203563.1 | RNA polymerase sigma factor RpoD | - |
| PYW30_RS10655 | - | 1579296..1579454 (-) | 159 | Protein_1545 | translation initiation factor IF-2 N-terminal domain-containing protein | - |
| PYW30_RS07865 | dnaG | 1579475..1581361 (-) | 1887 | WP_042219488.1 | DNA primase | - |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83398.40 Da Isoelectric Point: 4.7434
>NTDB_id=796694 PYW30_RS07855 WP_003134200.1 1575589..1577835(-) (clpC) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK
Nucleotide
Download Length: 2247 bp
>NTDB_id=796694 PYW30_RS07855 WP_003134200.1 1575589..1577835(-) (clpC) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCCGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTAGCCCAAAAAATCGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTTGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGATG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGAGAAGGAAATATGGATGCCGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCTAAC
CGTTATATTCAGGACCGTTTCCTTCCTGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGTATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGTTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACACAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCCGGTC
AATTGACAGAACGTGTACGTCGTAACCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGACGGTCGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACGAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCAATTGCTGATTTTTATATTGAGCATCCTGAATATAAAGAATTACTGGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCCGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTAGCCCAAAAAATCGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTTGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGATG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGAGAAGGAAATATGGATGCCGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCTAAC
CGTTATATTCAGGACCGTTTCCTTCCTGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGTATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGTTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACACAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCCGGTC
AATTGACAGAACGTGTACGTCGTAACCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGACGGTCGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACGAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCAATTGCTGATTTTTATATTGAGCATCCTGAATATAAAGAATTACTGGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
86.81 |
99.332 |
0.862 |
| clpE | Streptococcus mutans UA159 |
76.821 |
100 |
0.775 |
| clpE | Streptococcus pneumoniae TIGR4 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae Rx1 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae D39 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae R6 |
77.565 |
97.727 |
0.758 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
53.13 |
83.289 |
0.443 |
| clpC | Streptococcus pneumoniae D39 |
46.19 |
85.963 |
0.397 |
| clpC | Streptococcus pneumoniae Rx1 |
46.19 |
85.963 |
0.397 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.034 |
85.963 |
0.396 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.798 |
81.952 |
0.392 |
| clpC | Streptococcus mutans UA159 |
46.688 |
82.754 |
0.386 |
| clpC | Streptococcus thermophilus LMD-9 |
45.847 |
83.69 |
0.384 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.484 |
82.888 |
0.377 |