Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RA165_RS06135 Genome accession   NZ_CP132550
Coordinates   1011396..1012025 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain XL1-Blue     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006396..1017025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA165_RS06115 ycbZ 1006797..1008557 (-) 1761 WP_000156518.1 Lon protease family protein -
  RA165_RS06120 matP 1008743..1009195 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RA165_RS06125 ompA 1009271..1010311 (-) 1041 WP_000750416.1 porin OmpA -
  RA165_RS06130 sulA 1010668..1011177 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RA165_RS06135 sxy/tfoX 1011396..1012025 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RA165_RS06140 yccS 1011988..1014150 (-) 2163 WP_000875061.1 YccS family putative transporter -
  RA165_RS06145 yccF 1014160..1014606 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RA165_RS06150 helD 1014729..1016783 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=796691 RA165_RS06135 WP_000839153.1 1011396..1012025(+) (sxy/tfoX) [Escherichia coli strain XL1-Blue]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=796691 RA165_RS06135 WP_000839153.1 1011396..1012025(+) (sxy/tfoX) [Escherichia coli strain XL1-Blue]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1