Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PYW43_RS03060 Genome accession   NZ_CP118949
Coordinates   618433..620229 (+) Length   598 a.a.
NCBI ID   WP_039934813.1    Uniprot ID   -
Organism   Aerococcus viridans strain DSM 20340     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 613433..625229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW43_RS03040 - 613829..615148 (-) 1320 WP_060779355.1 IS1380 family transposase -
  PYW43_RS03045 trpS 615476..616471 (+) 996 WP_003141388.1 tryptophan--tRNA ligase -
  PYW43_RS03050 - 616805..616978 (+) 174 WP_003141387.1 hypothetical protein -
  PYW43_RS03055 - 617267..618364 (+) 1098 WP_003141386.1 competence protein CoiA -
  PYW43_RS03060 pepF 618433..620229 (+) 1797 WP_039934813.1 oligoendopeptidase F Regulator
  PYW43_RS03065 - 620352..621047 (-) 696 WP_003141382.1 DsbA family protein -
  PYW43_RS03070 - 621262..621852 (-) 591 WP_003141380.1 CYTH domain-containing protein -
  PYW43_RS03075 - 622061..622762 (+) 702 WP_039934810.1 GTP pyrophosphokinase -
  PYW43_RS03080 - 622855..623694 (+) 840 WP_003141377.1 NAD kinase -
  PYW43_RS03085 - 623778..624659 (+) 882 WP_039934821.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67653.27 Da        Isoelectric Point: 4.4726

>NTDB_id=796645 PYW43_RS03060 WP_039934813.1 618433..620229(+) (pepF) [Aerococcus viridans strain DSM 20340]
MAKIFEVKPRDEVDSAFQWDLTSIFPDDQAFENALSGFPAKADAFQDYKGTLDQGADQVVTVLEALLAMSRELETLYVYA
HLKHDQDTGDNKYLTYNSQAGALLAQVSEKISWFEPEVLTVSEDVQKTLEDHAEYGHFFRGLFAKKAHVLSPNEEALLAG
ASEIFAGSSTTFSLLNNADLKFGKVKDEEGNDVTLSHGSYGVLLESADRSVRENAFKQLYATYEGVKNTNASLMSGNIKG
HNYTAKIRHYDSARQKALDNNNIPESVYDTLVDTVRKNTNLLHEYVALRKDMLGLDDLQMWDMYTPLTGDAPVKFTYEEA
KEITFKALAPLGDQYLKDLAKAFDEKWIDVYENEGKRSGAYSSGAYDTNPYILLNWQDSLNDLYTLVHELGHSMHSYYTR
SNQPYVYGDYSIFVAEIASTTNENLLTSYLLDTIDDKDAQIYILNHYLDGVKGTIFRQTQFAEFEKFMHESDANGQPLTA
DFLSENYFELNKAYYGPSIGEDKTIALEWSRIPHFYMNYYVYQYATGFSAANTLAKRIVEGEDGAVDKYLNYLKSGSSDF
PINVMQKAGIDMTNATYIEETFAQFEQRLAELKGLLNK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=796645 PYW43_RS03060 WP_039934813.1 618433..620229(+) (pepF) [Aerococcus viridans strain DSM 20340]
ATGGCAAAAATTTTTGAAGTAAAACCTAGAGATGAAGTGGATAGTGCGTTTCAATGGGACTTAACCAGTATCTTCCCAGA
TGATCAAGCTTTTGAGAATGCCTTAAGTGGATTCCCAGCAAAAGCGGATGCTTTTCAAGACTATAAAGGCACTTTAGACC
AAGGTGCTGACCAAGTGGTAACCGTATTAGAGGCGTTATTAGCGATGAGTCGTGAATTGGAAACCCTTTATGTTTATGCA
CATTTAAAACATGACCAAGATACAGGAGACAACAAGTACCTAACTTACAACAGTCAAGCTGGCGCCTTACTTGCTCAAGT
GAGTGAAAAGATTTCTTGGTTTGAGCCAGAAGTATTAACAGTATCTGAAGATGTACAAAAAACATTGGAAGACCACGCTG
AATATGGTCACTTCTTCCGTGGGTTATTTGCGAAGAAAGCGCATGTCTTATCACCAAATGAAGAGGCTTTACTTGCTGGT
GCTAGCGAAATTTTTGCTGGCTCTTCAACAACTTTCTCACTTTTAAACAATGCCGACTTAAAATTCGGTAAAGTCAAAGA
TGAAGAGGGCAATGACGTTACCCTTTCTCACGGTTCATACGGTGTCCTACTAGAAAGTGCAGACCGTTCTGTTCGAGAAA
ATGCCTTTAAACAACTTTATGCAACTTATGAAGGGGTTAAAAATACCAATGCTTCATTGATGTCAGGTAACATTAAAGGG
CATAATTATACGGCTAAAATTCGTCACTACGATTCAGCACGTCAAAAAGCTTTAGACAACAACAATATTCCAGAAAGTGT
TTATGACACATTAGTAGATACTGTAAGAAAGAATACAAATCTATTACATGAATATGTTGCCTTAAGAAAAGACATGCTAG
GTCTTGATGACTTACAAATGTGGGATATGTATACACCATTAACAGGTGATGCACCGGTGAAATTTACTTACGAAGAAGCT
AAAGAGATTACCTTTAAAGCTTTAGCGCCTTTAGGTGACCAATACTTGAAAGACTTGGCCAAAGCTTTTGACGAGAAATG
GATCGATGTTTACGAAAATGAAGGTAAGCGTTCAGGCGCATACTCGTCAGGTGCTTATGATACCAACCCATATATCTTGC
TAAACTGGCAAGATTCGTTGAATGACTTGTATACGCTAGTTCATGAGTTAGGTCACTCAATGCACTCTTATTACACTAGA
AGTAACCAACCATACGTATATGGTGACTACTCAATTTTCGTAGCAGAAATTGCCTCTACGACAAACGAAAACTTATTAAC
TTCATATTTATTGGATACGATTGATGATAAGGATGCACAAATCTATATCTTGAATCATTATCTTGATGGCGTAAAAGGCA
CAATCTTCCGTCAAACTCAGTTTGCTGAATTTGAAAAATTCATGCACGAATCTGATGCAAACGGGCAACCTTTAACAGCA
GACTTCCTTAGCGAAAACTACTTCGAATTAAACAAAGCCTACTATGGTCCGTCAATCGGAGAGGATAAAACAATCGCTTT
AGAATGGTCTCGTATCCCTCACTTCTACATGAACTACTATGTTTACCAATATGCAACAGGATTCTCTGCTGCCAACACAT
TGGCTAAACGTATAGTAGAAGGTGAAGATGGTGCCGTTGACAAGTACTTAAATTACTTGAAATCAGGTTCATCCGATTTC
CCAATTAATGTTATGCAAAAAGCGGGTATTGATATGACCAATGCCACTTATATCGAAGAAACCTTTGCCCAATTCGAGCA
AAGATTAGCTGAATTAAAAGGCTTATTAAACAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(128-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

99.666

0.498